TCONS_00047752-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047752-protein
Unique NameTCONS_00047752-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047752-protein ID=TCONS_00047752-protein|Name=TCONS_00047752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MLKGVYQNNLISCIHNFHIILNLVSNLLYAEQLFNLKFAAKNLERSSKKC
EKEEKAEKLKLKKAIQKGNVDGARIYAENAIRQKNQALHFLKLSSRVDAV
SQRVQTAVTMKQVTGSMSSVVKSMDSALKSMNLEKVSAMMDKFEKQFEQL
DVQTQVMDETMSASTTLTVPQNQVDSLLHQVADEHGLEVNMELPNSEAGA
IGAASASTSASQEQDDLSLRLAKLRQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030406XLOC_030406Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047752TCONS_00047752Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 133..153
NoneNo IPR availableCOILSCoilCoilcoord: 36..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..226
IPR005024Snf7 familyPFAMPF03357Snf7coord: 35..195
e-value: 2.6E-18
score: 66.1

Blast
[Close]
BLAST of TCONS_00047752-protein vs. Swiss-Prot (Human)
Match: CHM1B (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 6.838e-75
Identity = 134/193 (69.43%), Postives = 167/193 (86.53%), Query Frame = 0 
Query:   33 LFNLKFAAKNLERSSKKCEKEEKAEKLKLKKAIQKGNVDGARIYAENAIRQKNQALHFLKLSSRVDAVSQRVQTAVTMKQVTGSMSSVVKSMDSALKSMNLEKVSAMMDKFEKQFEQLDVQTQVMDETMSASTTLTVPQNQVDSLLHQVADEHGLEVNMELPNSEAGAIGAASASTSASQEQDDLSLRLAKLR 225
            LFNLKFAAK L RS+KKC+KEEKAEK K+KKAIQKGN++ ARI+AENAIRQKNQA++FL++S+RVDAV+ RVQTAVTM +VT SM+ VVKSMD+ LK+MNLEK+SA+MDKFE QFE LDVQTQ M++TMS++TTLT PQNQVD LL ++ADE GL++NMELP  + G++G    ++ AS EQD+LS RLA+LR
Sbjct:    8 LFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG----TSVASAEQDELSQRLARLR 196
The following BLAST results are available for this feature:
BLAST of TCONS_00047752-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM1B6.838e-7569.43Charged multivesicular body protein 1b OS=Homo sap... [more]
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