TCONS_00047795-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047795-protein
Unique NameTCONS_00047795-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047795-protein ID=TCONS_00047795-protein|Name=TCONS_00047795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp
CKMNFIISFSIFFILLHPSKSQDAIVNGTWAPWGDWGGCDKPCGTGFRYR
WRKCTNPAPQNGGLDCAGDYREHKTCNTNLCERELGGTWRTTKLCKREQG
YCLGPNGRKPSRRGVRELSSEMRGWKIWERKNCMQKCLQTRGITACEMPF
GSYRTHDYSRYWTNKGCYGHTAPVTRGNGYEKTYCWVLSKCKTDGVWSQW
SSWTGCPVCGPSGQRNRTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPP
CPIHGKWSKWGFWGKCSRSCGTGRKTRTRTCTNPAPQHGGLDCTDSDTAV
QNCNTKPCPVDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDC
TDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASCGTGQQTRTRTC
TNPEPQHGGLNCADSDSVVRNCNAKPCLDLTTDKNEIAEKVCKMKCIDMK
RNCGQMLGCGDRRFDVSKHCPETCASTTHLTTDENEIAEKVCKMKCIDMK
RNCGQVLGCGDRRFDVSKHCPKTCASTTLCEPKKEAMVMCHGRSYTLHGK
AKNGASAKQYEWYKKSKKDSLVRLDSDSQYSITYSDRDPTKSSLTIRSFS
MVKHEGFYAFRKANLNYIDCYDYKVTAFLQLEYNDGKDKFDVLAGEDLTL
AVKAKDPASKTSWTVNGQSLIEPLIKASPHYNLPSTDDFGPTAQILEILN
PQRRHGGIYKLKWSTRFHQCPIANIYFNVTVRERDTTSTTTSPTTITTTS
VITTTPPSLPSTDKPVLKVGQKYVSQDENDDSIGFVMLIVGTFLIGLAIE
SVLWYFYKRELARKIRRSLSISLLHKDKNYKSESINQDELATDEENSDSQ
PLLHNGNVTPNSLQPIPSYRYGEGTLQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030414XLOC_030414Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047795TCONS_00047795Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR013783Ig-like_fold
IPR007110Ig-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 314..368
e-value: 7.6E-14
score: 62.0
coord: 257..309
e-value: 1.3E-13
score: 61.3
coord: 197..252
e-value: 1.6E-6
score: 37.7
coord: 376..428
e-value: 1.9E-13
score: 60.7
coord: 30..82
e-value: 1.4E-12
score: 57.8
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 198..251
e-value: 1.2E-5
score: 25.3
coord: 377..427
e-value: 4.5E-11
score: 42.7
coord: 258..308
e-value: 3.5E-10
score: 39.8
coord: 32..81
e-value: 3.1E-8
score: 33.6
coord: 315..367
e-value: 1.0E-8
score: 35.1
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 372..427
e-value: 1.9E-17
score: 62.8
coord: 310..367
e-value: 2.6E-15
score: 56.0
coord: 26..81
e-value: 1.4E-15
score: 56.8
coord: 193..251
e-value: 2.0E-9
score: 37.1
coord: 253..308
e-value: 4.5E-17
score: 61.6
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 311..368
score: 13.048
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 27..82
score: 12.879
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 373..428
score: 13.736
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 194..252
score: 11.1
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 254..309
score: 13.418
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 371..427
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 26..81
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 191..246
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 307..367
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 250..308
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 633..742
e-value: 3.9E-5
score: 23.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 530..617
e-value: 0.0036
score: 16.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 835..867
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 641..730

Blast
[Close]
BLAST of TCONS_00047795-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 6.454e-67
Identity = 143/403 (35.48%), Postives = 183/403 (45.41%), Query Frame = 0 
Query:   26 VNGTWAPWGDWGGCDKPCGTGFRYRWRKCTNPAPQNGGLDCAGDYREHKTCNTNLCERELGGTWRTTKLCKREQGYCLGPNGRKPSRRGVRELSSEMRGWKIWERKNCMQKCLQTRGITACEMPFGSYRTHDYSRYWT-NKGCYGHTAPVTRGNGYEKTYCWVLSKCKTDGVWSQWSSWTGCPVCGPSGQRNRTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPPCPIHGKWSKWGFWGKCSRSCGTGRKTRTRTCTNPAPQHGGLDCTDSDTAVQNCNTKPCPVDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASCGTGQQTRTRTCTNPEPQHGGLNCADSDSVVRNCNAKPC 427
            V+G ++ W  W  C   CG G + R R C  P P NGG  C G   E + C    C   + G+W                                   W +WE   C + C   RG              + +R  T N     H      GN  E   C +   C   G WS W  W  C      G + R R C +P P +GGS C   +  T+++ C ++  CPIHGKW+ W  W  CS SCG G + RTR C++P PQ+GG  C  SD     CN+ PCP  G WS W  WG CS +C+ GQ  R RTC NP P  GG  C   DS  +I+RC + +CP   +DG W  W SW +CSASCG G++TR R C +P P  GG  C    + V  CN + C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP--VDGSWSE---------------------------------WSLWEE--CTRSC--GRG--------------NQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAE--TQMQVCNERN-CPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDS--QIQRCNTDMCP---VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 2 Score: 228.409 bits (581), Expect = 1.249e-61
Identity = 109/237 (45.99%), Postives = 139/237 (58.65%), Query Frame = 0 
Query:  191 CKTDGVWSQWSSWTGCPVCGPSGQRNRTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPPCPIHGKWSKWGFWGKCSRSCGTGRKTRTRTCTNPAPQHGGLDCTDSDTAVQNCNTKPCPVDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASCGTGQQTRTRTCTNPEPQHGGLNCADSDSVVRNCNAKPC 427
             +  G +SQWS+W  C V    G + R+R C  P P  GG  C  +D   E+ NC+ KP CP+ G WS+W  W +C+RSCG G +TRTRTC NP+ QHGG  C  +   +  CN +PCPV G WS W  WG CS SC  G QTR R C NP P +GG  C   +++ ++  C    C   PI GKW+ W+SW  CS SCG G + RTR C++P PQ+GG  C  SD     CN+ PC
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSD--LEMRNCQNKP-CPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQV--CNERNC---PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754
The following BLAST results are available for this feature:
BLAST of TCONS_00047795-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN16.454e-6735.48Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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