TCONS_00047806-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047806-protein
Unique Name	TCONS_00047806-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	681

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047806-protein ID=TCONS_00047806-protein|Name=TCONS_00047806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp
SSVLIKKLITLIIFIMAEPNAKRSKTDSKGKVCLVGSGIVGRSFAVIFSK
AGYSVSLHDTVEQQLKDAMILIKAQLEDFENKGLLKDCIHKTADAAFSMI
STTLDLKEAMDGAFFLQENVPENLELKQKIFKEFDALASKDMILSSSTSA
IVPSKFTLNLKHTKNCLVSHPINPPALCPFIEILPSPETDQEVVEKTLSL
WRKCGMSPITVKKEVAGFVLNRLQYALMGEAYRLVENGVCSPEDVNTTLT
DGLAMRWSLIGPFETIHLNAPKGVKDYFERYTASMEPIIQEQTESNTVFK
QETIDKIHESMCRIAPVESIIERSKLRDSRLSALAVHRNSEKAGIVVPTT
VGNTMSNEGTKVESKGKICIVGSGLVGRSFAVIFSKAGYSVCLYDNVEKQ
LKEAMILIKANLDDFENKGLLKYTAVKTADDAFSFVSTATDLKEAMNGAF
FLQESVPENLELKQKVFKEFDALASDDMILSSSTSCIVPSKFTLNLKHTK
NCIVSHPVNPPALCPFLEVVPSTETNQEVVEKTLSLWRECGMSPITVKKE
VAGFVLNRLQYALLAESYRLVENDVCTPDDVNITLTDGLAMRWSLIGPFE
TGHLNAPKGIKDYYERYGPPTEAVLKEQSETVLKFKQETIDKIHESMCRI
APVESIIERSKLRDSRLSALAVHRNNEKAKL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030419	XLOC_030419	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047806	TCONS_00047806	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013328	6PGD_dom_2
IPR006176	3-OHacyl-CoA_DH_NAD-bd
IPR006108	3HC_DH_C
IPR006180	3-OHacyl-CoA_DH_CS
IPR016040	NAD(P)-bd_dom
IPR008927	6-PGluconate_DH_C-like

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006631	fatty acid metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..82
None	No IPR available	COILS	Coil	Coil	coord: 398..418
None	No IPR available	GENE3D	3.40.50.720		coord: 16..218 e-value: 2.2E-31 score: 108.6 coord: 352..554 e-value: 2.9E-35 score: 121.2
IPR013328	6-phosphogluconate dehydrogenase, domain 2	GENE3D	1.10.1040.10		coord: 555..646 e-value: 1.6E-13 score: 50.6 coord: 219..310 e-value: 7.4E-17 score: 61.3
IPR006176	3-hydroxyacyl-CoA dehydrogenase, NAD binding	PFAM	PF02737	3HCDH_N	coord: 31..213 e-value: 6.6E-43 score: 146.6 coord: 367..549 e-value: 4.0E-43 score: 147.3
IPR006108	3-hydroxyacyl-CoA dehydrogenase, C-terminal	PFAM	PF00725	3HCDH	coord: 217..284 e-value: 6.2E-14 score: 52.3 coord: 553..620 e-value: 1.5E-10 score: 41.4
IPR006180	3-hydroxyacyl-CoA dehydrogenase, conserved site	PROSITE	PS00067	3HCDH	coord: 214..239
IPR006180	3-hydroxyacyl-CoA dehydrogenase, conserved site	PROSITE	PS00067	3HCDH	coord: 550..575
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 30..214
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 366..550
IPR008927	6-phosphogluconate dehydrogenase C-terminal domain-like	SUPERFAMILY	48179	6-phosphogluconate dehydrogenase C-terminal domain-like	coord: 553..623
IPR008927	6-phosphogluconate dehydrogenase C-terminal domain-like	SUPERFAMILY	48179	6-phosphogluconate dehydrogenase C-terminal domain-like	coord: 217..286

Blast

[Close]

BLAST of TCONS_00047806-protein vs. Swiss-Prot (Human)
Match: CRYL1 (Lambda-crystallin homolog OS=Homo sapiens GN=CRYL1 PE=1 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 5.003e-84
Identity = 131/312 (41.99%), Postives = 208/312 (66.67%), Query Frame = 0

Query:   26 TDSKGKVCLVGSGIVGRSFAVIFSKAGYSVSLHDTVEQQLKDAMILIKAQLEDFENKGLLKDCIHKTADAAFSMISTTLDLKEAMDGAFFLQENVPENLELKQKIFKEFDALASKDMILSSSTSAIVPSKFTLNLKHTKNCLVSHPINPPALCPFIEILPSPETDQEVVEKTLSLWRKCGMSPITVKKEVAGFVLNRLQYALMGEAYRLVENGVCSPEDVNTTLTDGLAMRWSLIGPFETIHLNAPKGVKDYFERYTASMEPIIQEQTESNTVFKQETIDKIHESMCRIAP--VESIIERSKLRDSRLSALA 335
            + + G V +VGSG++GRS+A++F+  G+ V L+D  +QQ+++A+  I+ +++  E  G LK  +  + +   S+IS   +++EA++GA  +QE VPE+LELK+KIF + D++    +ILSSSTS ++PSK    L H K C+V+HP+NPP   P +E++P PET    V++T +L +K G  P+ V+KEVAGFVLNRLQYA++ EA+RLVE G+ SP D++  +++GL MR++ IGP ET+HLNA +G+  Y +RY+  ++ ++Q        F + T +K+++ MC   P   E +  R + RD  L  LA
Sbjct:    3 SSAAGCVVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSL--SVEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA-EGMLSYCDRYSEGIKHVLQTFGPIPE-FSRATAEKVNQDMCMKVPDDPEHLAARRQWRDECLMRLA 310

HSP 2 Score: 262.692 bits (670), Expect = 3.464e-82
Identity = 130/310 (41.94%), Postives = 204/310 (65.81%), Query Frame = 0

Query:  364 SKGKICIVGSGLVGRSFAVIFSKAGYSVCLYDNVEKQLKEAMILIKANLDDFENKGLLKYTAVKTADDAFSFVSTATDLKEAMNGAFFLQESVPENLELKQKVFKEFDALASDDMILSSSTSCIVPSKFTLNLKHTKNCIVSHPVNPPALCPFLEVVPSTETNQEVVEKTLSLWRECGMSPITVKKEVAGFVLNRLQYALLAESYRLVENDVCTPDDVNITLTDGLAMRWSLIGPFETGHLNAPKGIKDYYERYGPPTEAVLKEQSETVLKFKQETIDKIHESMCRIAP--VESIIERSKLRDSRLSALA 671
            + G + IVGSG++GRS+A++F+  G+ V LYD  ++Q++ A+  I+  +   E  G LK +   + ++  S +S   +++EA+ GA  +QE VPE+LELK+K+F + D++  D +ILSSSTSC++PSK    L H K CIV+HPVNPP   P +E+VP  ET    V++T +L ++ G  P+ V+KEVAGFVLNRLQYA+++E++RLVE  + +P D+++ +++GL MR++ IGP ET HLNA +G+  Y +RY    + VL+     + +F + T +K+++ MC   P   E +  R + RD  L  LA
Sbjct:    5 AAGCVVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSL--SVEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA-EGMLSYCDRYSEGIKHVLQTFG-PIPEFSRATAEKVNQDMCMKVPDDPEHLAARRQWRDECLMRLA 310

The following BLAST results are available for this feature:

BLAST of TCONS_00047806-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047806-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CRYL1	5.003e-84	41.99	Lambda-crystallin homolog OS=Homo sapiens GN=CRYL1...	[more]

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TCONS_00047806-protein (polypeptide) - C. hemisphaerica