TCONS_00047808-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047808-protein
Unique NameTCONS_00047808-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047808-protein ID=TCONS_00047808-protein|Name=TCONS_00047808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MSFSSFFCLSYSVDNSEWMRNGDFMPTRISAQQDAVSVICHAKTRQNPEN
NVALMTSASLEVLVTLTTDVGRILSKLHNVQPKGSANFLTGVKIAHLALK
HRQGKNHRMRIVIFVGSPIEVVDKELTKVAKKLKKEKVNVDIVLLGENTP
THDKLTQFVETINGKEGTGSHLVVVPPSPNLTDALRTSPIVQGEDGYTPA
GGDFGSGFDVDPNLDPELALALRVSMEEQRLRQDPTKPEGEGAATTTPAA
GGKTEATTGGTEDSLLMNAMYPGGNSVDFNAMSEEDQIALAIQMSMNDAN
ADDAKKDTPTAMDTDTPAPASDQPMDEDQDYSEVMNNPELLQQIVGNLPG
VDPNSADIQNALQALSENQEGENKDKKEEDKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030420XLOC_030420Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047808TCONS_00047808Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR003903UIM_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 359..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..382
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..260
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 8..190
e-value: 7.4E-5
score: 32.1
IPR002035von Willebrand factor, type APFAMPF13519VWA_2coord: 13..115
e-value: 2.0E-20
score: 73.3
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 9..188
e-value: 6.8E-26
score: 90.9
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 8..190
score: 8.738
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 13..175
IPR003903Ubiquitin interacting motifSMARTSM00726uimcoord: 283..302
e-value: 0.0063
score: 25.7
coord: 213..232
e-value: 25.0
score: 13.7
IPR003903Ubiquitin interacting motifPROSITEPS50330UIMcoord: 283..302
score: 10.716
IPR003903Ubiquitin interacting motifPROSITEPS50330UIMcoord: 213..232
score: 8.654

Blast
[Close]
BLAST of TCONS_00047808-protein vs. Swiss-Prot (Human)
Match: PSMD4 (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 3.341e-119
Identity = 201/374 (53.74%), Postives = 253/374 (67.65%), Query Frame = 0 
Query:    4 SSFFCLSYSVDNSEWMRNGDFMPTRISAQQDAVSVICHAKTRQNPENNVALMTSAS-LEVLVTLTTDVGRILSKLHNVQPKGSANFLTGVKIAHLALKHRQGKNHRMRIVIFVGSPIEVVDKELTKVAKKLKKEKVNVDIVLLGENTPTHDKLTQFVETINGKEGTGSHLVVVPPSPNLTDALRTSPIVQGEDGYTPAGGDFGSGFDVDPNLDPELALALRVSMEEQRLRQDPTKPEGEGAATTTPAAGGKTEATTGGTEDS------LLMNAMYPGGNSV-DFNAMSEEDQIALAIQMSMNDA---NADDAKKDTPTAMDTDTPAPASDQPMDEDQDYSEVMNNPELLQQIVGNLPGVDPNSADIQNALQALS 366
            S+  C    VDNSE+MRNGDF+PTR+ AQQDAV+++CH+KTR NPENNV L+T A+  EVL TLT D GRILSKLH VQPKG   F TG+++AHLALKHRQGKNH+MRI+ FVGSP+E  +K+L K+AK+LKKEKVNVDI+  GE     +KLT FV T+NGK+GTGSHLV VPP P+L DAL +SPI+ GE G     G     F VDP+ DPELALALRVSMEEQR RQ+        A+             T GTEDS      + ++    G   + D ++M+EE+QIA A+QMS+  A    A+ A  D  +AMDT  PA        E+ DY +VM +PE LQ ++ NLPGVDPN+  I+NA+ +L+
Sbjct:    5 STMVC----VDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIA------TTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESADIDASSAMDTSEPA-------KEEDDY-DVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLA 360
The following BLAST results are available for this feature:
BLAST of TCONS_00047808-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD43.341e-11953.7426S proteasome non-ATPase regulatory subunit 4 OS=... [more]
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