TCONS_00047881-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047881-protein
Unique Name	TCONS_00047881-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	710

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047881-protein ID=TCONS_00047881-protein|Name=TCONS_00047881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=710bp
MNITEYLIQSKLPNKERLHKKYSKKRFDSSHNLYRRNIVSHYACVNSIAF
SKDGELFVSGGDDKRVLLWNTSDLCQKEKPKPTIMKKEHYSNIFSTVFDC
TAENVFSAGNDQKIIQHNIERREAVGYFFFDDSIYAVDSPPDNPKLLVAS
GEDGTVQVVDVRSPLERTKLAASSGSYHSAVFHPINSQYIATANSLHGVS
LWDIRKPLKILKKVSTGSGMSVRFNILGTRLLALYRKGGPVVYKLDGSNC
EKEISHRMNHEKYQNYCTMKSACFAGDKDEYVVSGSDDFNIYVWKIPDLL
DERCKLNSPHFILEGHRSIVNQVRYNSHLNLLASAGVEKCIKLWSCFPLR
DGEGDLTNDTHYTQRRKYTHEQYMEMTSTTPRMSHNYDDESVEEDPRMIA
LFDSLIERTHNDWASSDSDEGGGADAPDESMNNTRMQRILSLLLDAYAEV
DNNSSSSSSSSSEEEDQRNEQANEQTQQTFGVSINELRRLFRSNDHTVDS
ELQDEERGTTNDDLSTSRESEINLQLSERKTDEENKIEHETSERCEKLDI
ENKQTDSKFDGDLDTQKEKGNDKNENETVFTIKDCAHGSVVDTSSMTTHS
CDSENNLVKQNSDLSCTMIACSSSITERTRLCEINISKTEPIKLANNLEL
PGPSSSSSSTHSIGTLLSEDRSIEPNTTSIEFESDENVKKCSSKAGFNKS
SSRAKRNYRK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030472	XLOC_030472	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047881	TCONS_00047881	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 121..160 e-value: 0.48 score: 19.0 coord: 306..345 e-value: 3.0E-5 score: 33.4 coord: 163..203 e-value: 24.0 score: 8.3 coord: 79..118 e-value: 33.0 score: 7.4 coord: 247..295 e-value: 0.94 score: 17.2 coord: 31..70 e-value: 3.9E-6 score: 36.4
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 40..70 e-value: 9.4E-6 score: 26.2 coord: 311..345 e-value: 0.054 score: 14.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 38..70 score: 13.282
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 313..345 score: 10.976
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 21..288 e-value: 2.0E-33 score: 115.0
None	No IPR available	GENE3D	1.10.10.670		coord: 289..396 e-value: 4.1E-9 score: 35.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 412..431
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 496..573
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..481
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 647..685
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 38..212 score: 16.243
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 262..345 score: 9.889
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 35..344

Blast

[Close]

BLAST of TCONS_00047881-protein vs. Swiss-Prot (Human)
Match: DCAF5 (DDB1- and CUL4-associated factor 5 OS=Homo sapiens GN=DCAF5 PE=1 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 1.616e-103
Identity = 175/424 (41.27%), Postives = 257/424 (60.61%), Query Frame = 0

Query:    3 ITEYLIQSKLPNKERLHKKYSKKRFDSSHNLYRRNIVSHYACVNSIAFSKD-GELFVSGGDDKRVLLWNTSDLCQKEKPKPTIMKKEHYSNIFSTVFDCTAENVFSAGNDQKIIQHNIERREAVGYFFFDDSIYAVDSPPDNPKLLVASGEDGTVQVVDVR-SP-LERTKLAASSGSYHSAVFHPINSQYIATANSLHGVSLWDIRKP----LKILKKVSTGSGMSVRFNILGTRLLALYRKGGPVVYKLDGSNCEKEISHRMNHEKYQNYCTMKSACFAGDKDEYVVSGSDDFNIYVWKIPDLLDERCK-----LNSPHFILEGHRSIVNQVRYNSHLNLLASAGVEKCIKLWSCFPLRDGEGDLTNDTHYTQRRKYTHEQYMEMT-STTPRMSHNYDDESVEEDPRMIALFDSLIERTHNDW 413
            +  +L Q  L     L + + ++R     NLY+++++ H+ CVN+I FS + G+  VSGGDD+RVLLW+        + KP  +K EH+SNIF   F+     VFS GND+++I H++E  E +  F  +D++Y +   P N  +  +S +DG V + D+R SP  E   LA    ++HS +F+P+  + +ATANS  GV LWDIRKP    L+    +S  S MSVRFN  GT+LLAL R+  PV+Y +      +    + +++ Y N CTMKS CFAGD+D+Y++SGSDDFN+Y+W+IP   D         +N    +L+GHRSIVNQVR+N H  ++ S+GVEK IK+WS +      GDL        R  YTHE+Y+ +  ++   +SH+Y ++SV+EDPRM+A FDSL+ R    W
Sbjct:   14 VVGFLSQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHS-RVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLPPVLYDIH----SRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWRIP--ADPEAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREIEGW 430

The following BLAST results are available for this feature:

BLAST of TCONS_00047881-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047881-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCAF5	1.616e-103	41.27	DDB1- and CUL4-associated factor 5 OS=Homo sapiens...	[more]

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TCONS_00047881-protein (polypeptide) - C. hemisphaerica