TCONS_00047911-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047911-protein
Unique Name	TCONS_00047911-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	304

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047911-protein ID=TCONS_00047911-protein|Name=TCONS_00047911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MDEQSCPRCKSTSYRNNKLKLLVNVCGHKLCSTCVDVLFTRPSAACPQCN
TALRRSDFRVQQFEDALVEKEVDIRRKIVKIFNKREEDFKTLLDYNNYLE
DIEVIIFNLANKQNVDETKKKVDAYKKDNEKLIRRNNTKISQEEALMKAS
IEADLQSAETKRKMLVEEVENAALQKKKEKENLINDLIYANAPAEEVIAR
HKLIKEQHQQQKMEEEEQKKSFFFSEKNKNSHFVNQPIVEAPLFIYQEST
REWFGPSPPEEDALQSKGYLQHIRSASSSERAGGYTESIACQRAIQEAFD
CLFI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030485	XLOC_030485	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047911	TCONS_00047911	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR004575	MAT1/Tfb3
IPR015877	Cdk-activating_kinase_MAT1_cen
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0006289	nucleotide-excision repair

Vocabulary: **Cellular Component**
Term	Definition
GO:0005675	holo TFIIH complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
cellular_component	GO:0005675	holo TFIIH complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 198..218
None	No IPR available	COILS	Coil	Coil	coord: 115..135
None	No IPR available	COILS	Coil	Coil	coord: 148..186
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 2..60
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 6..49 e-value: 0.0014 score: 27.9
IPR001841	Zinc finger, RING-type	PFAM	PF17121	zf-C3HC4_5	coord: 4..49 e-value: 1.6E-10 score: 40.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 6..50 score: 10.04
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 6..51 e-value: 2.54551E-4 score: 37.04
IPR004575	Cdk-activating kinase assembly factor MAT1/Tfb3	TIGRFAM	TIGR00570	TIGR00570	coord: 1..303 e-value: 6.4E-102 score: 339.0
IPR015877	Cdk-activating kinase assembly factor MAT1, centre	PFAM	PF06391	MAT1	coord: 53..237 e-value: 1.7E-50 score: 171.6
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 1..221 e-value: 5.3E-9 score: 35.1
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 26..35

Blast

[Close]

BLAST of TCONS_00047911-protein vs. Swiss-Prot (Human)
Match: MAT1 (CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.091e-89
Identity = 137/306 (44.77%), Postives = 207/306 (67.65%), Query Frame = 0

Query:    1 MDEQSCPRCKSTSYRNNKLKLLVNVCGHKLCSTCVDVLFTRPSAACPQCNTALRRSDFRVQQFEDALVEKEVDIRRKIVKIFNKREEDFKTLLDYNNYLEDIEVIIFNLANKQNVDETKKKVDAYKKDNEKLIRRNNTKISQEEALMKASIEADLQSAETKRKMLVEEVENAALQKKKEKENLINDLIYANAPAEEVIARHKLIKEQHQQQKMEEEEQKKSFFFSEKNK-NSHFVNQPI--VEAPLFIYQESTREWFGPSPPEEDALQSKGYLQHIRSASSSERAGGYTESIACQRAIQEAFDCLF 303
            MD+Q CPRCK+T YRN  LKL+VNVCGH LC +CVD+LF R +  CP+C T LR+S+FRVQ FED  V+KEV+IR+K++KI+NKREEDF +L +YN++LE++E I+FNL N  ++D TKKK++ Y+K+N+ +I++N  K+++E+  ++ ++E + Q  E +R  + +E +   + K+K K+  +++L  ++ P   ++A+HK    Q + Q +E+ +  K   FS   K   H    PI  +E  L+ YQ    E +GP  PE + L   GYL H+R+AS  + AGGYT S+AC RA+Q+AF  LF
Sbjct:    1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNKQAFLDELESSDLPVALLLAQHKDRSTQLEMQ-LEKPKPVKPVTFSTGIKMGQHISLAPIHKLEEALYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

The following BLAST results are available for this feature:

BLAST of TCONS_00047911-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047911-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MAT1	4.091e-89	44.77	CDK-activating kinase assembly factor MAT1 OS=Homo...	[more]

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TCONS_00047911-protein (polypeptide) - C. hemisphaerica