TCONS_00047918-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047918-protein
Unique NameTCONS_00047918-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047918-protein ID=TCONS_00047918-protein|Name=TCONS_00047918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
WLFTISSILEFMILLITTLKMEQKRYTLLPKQTVDNWVEAIGINKIPDEV
SEILSEDITYHIRELVHKSIQIMKHSRRSYLSVDDINSALRESDTDPIFG
HSGIEPFNFKAFHTKEGAKVCYLDEKDVNLRETAFDSSLPNEAGETSVKA
NWLVLEGYNCNSRGHLQKDLEPPLNEVMSKYLQNVTRALISEGDQLRKVA
LDDLCSNKKLQIIIPHLISFCSTQIKQHTGKETFPSIATHIISTINALVK
NHSVILTPYLIQLAKILLFTLMEAKIEAQHWYLHQKAATVLSLLARRHPH
SSPDIREQLLKSYLDTFTDPTSKQMAQLHGALCGITQLGITAITNGLFPK
IFEKMEILQKHLTPTDDLQGSPELLHVTNQLNETLSILFQSSCFPYVKQL
HKKTSSKMSKLYAELNELFGESFVLKCNLNAPKNPEPPVNDNLYNSLVTP
LPPKQPSLANDQDSTNGKFLRYETLKKTLISRDYNIKNTHVGNITVKTKW
RKKNLSKTNILDQGNFISDKRNHQSLTKTTRGIHKSYGRKKRNISQKIYL
TML
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030488XLOC_030488Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047918TCONS_00047918Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004823TAF_TATA-bd
IPR011442TAF6_C
IPR011989ARM-like
IPR009072Histone-fold
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0051090regulation of sequence-specific DNA binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0051090 regulation of sequence-specific DNA binding transcription factor activity
cellular_component GO:0005634 nucleus
molecular_function GO:0005488 binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004823TATA box binding protein associated factor (TAF)SMARTSM00803TAF_clscoord: 27..91
e-value: 5.0E-17
score: 72.6
IPR004823TATA box binding protein associated factor (TAF)PFAMPF02969TAFcoord: 27..91
e-value: 1.0E-16
score: 60.7
IPR011442TAF6, C-terminal HEAT repeat domainPFAMPF07571TAF6_Ccoord: 273..351
e-value: 7.1E-12
score: 45.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 120..449
e-value: 6.5E-9
score: 33.4
NoneNo IPR availableGENE3D1.10.20.10coord: 12..103
e-value: 4.6E-12
score: 45.7
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 26..93
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 166..399

Blast
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BLAST of TCONS_00047918-protein vs. Swiss-Prot (Human)
Match: TAF6L (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.131e-34
Identity = 96/336 (28.57%), Postives = 172/336 (51.19%), Query Frame = 0 
Query:   22 EQKRYTLLPKQTVDNWVEAIGINKIPDEVSEILSEDITYHIRELVHKSIQIMKHSRRSYLSVDDINSALRESDTDPIFGHSGIEPFNFKAFHTKEGAKVCYLDEKDVNLRETAFDSSLPNEAGETSVKANWLVLEG-YNCNSRGHLQKDLEPPLNEVMSKYLQNVTRALISEGDQLRKVALDDLCSNKKLQIIIPHLISFCSTQIKQHTGKETFPSIATHIISTINALVKNHSVILTPYLIQLAKILLFTLME---AKIEA--QHWYLHQKAATVLSLLARRHPHSSPDIREQLLKSYLDTFTDPTSKQMAQLHGALCGITQLGITAITNGLFPKI 351
            E++R+  +P+++V    E+ G+ ++ DEV+ +L+ED+ Y +RE    S Q MKH++R  L+V+D N ALR S  + + G+   E    +    +EG ++ + ++++VNL E A  +++P    ET+V+ +   L+G  N   +G +   +   L + + KY   VTRA++ +  QL KVAL DL +N K+  ++P+ +   S         E        ++    +L +N  + L PY+  L   +L+ ++E   A I     HW L   AA +LS +   H      + + +L S      DP  + +   +GA+ G+  LG  A+   L+P +
Sbjct:    5 EERRFVEIPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPMRP--AREG-ELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVS-SLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQL----HRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADPV-RPLCCHYGAVVGLHALGWKAVERVLYPHL 330
The following BLAST results are available for this feature:
BLAST of TCONS_00047918-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF6L1.131e-3428.57TAF6-like RNA polymerase II p300/CBP-associated fa... [more]
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