TCONS_00048013-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048013-protein
Unique NameTCONS_00048013-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048013-protein ID=TCONS_00048013-protein|Name=TCONS_00048013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
IGITEKNISKMLSILRSTTRGRTTQISRCLSTTLQTSQQQNVSAGEYKYV
AQLPSETTRDLHSINERNAATMFATELVRGMMMTLSYIFREPATLNYPFE
KGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDGS
RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHQELLYNKEK
LLENGDRWEPEIAANIQADYLYR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030552XLOC_030552Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048013TCONS_00048013Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0178964Fe4S_Fe-S-bd
IPR010226NADH_quinone_OxRdtase_chainI
IPR0179004Fe4S_Fe_S_CS
Vocabulary: Molecular Function
TermDefinition
GO:00515394 iron, 4 sulfur cluster binding
GO:0016651oxidoreductase activity, acting on NAD(P)H
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016020 membrane
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPFAMPF12838Fer4_7coord: 123..177
e-value: 1.3E-12
score: 47.9
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 115..144
score: 9.869
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 154..183
score: 10.743
IPR010226NADH-quinone oxidoreductase, chain ITIGRFAMTIGR01971TIGR01971coord: 80..201
e-value: 5.5E-50
score: 166.0
IPR010226NADH-quinone oxidoreductase, chain IHAMAPMF_01351NDH1_NuoIcoord: 71..207
score: 28.589
NoneNo IPR availableGENE3D3.30.70.20coord: 164..219
e-value: 4.0E-8
score: 32.5
NoneNo IPR availableGENE3D3.30.70.20coord: 117..163
e-value: 8.0E-17
score: 60.2
NoneNo IPR availableSUPERFAMILY548624Fe-4S ferredoxinscoord: 97..206
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 163..174
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 124..135

Blast
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BLAST of TCONS_00048013-protein vs. Swiss-Prot (Human)
Match: NDUS8 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 7.353e-111
Identity = 151/187 (80.75%), Postives = 161/187 (86.10%), Query Frame = 0 
Query:   37 SQQQNVSAGEYKYVAQLPSETTRDLHSINERNAATMFATELVRGMMMTLSYIFREPATLNYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHQELLYNKEKLLENGDRWEPEIAANIQADYLYR 223
            S   +  A  YKYV     E   D+ S+ +R A T+  TEL RG+ MTLSY+FREPAT+NYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPR DGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETH+ELLYNKEKLL NGD+WE EIAANIQADYLYR
Sbjct:   26 SLHSSAVAATYKYVNMQDPEM--DMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210
The following BLAST results are available for this feature:
BLAST of TCONS_00048013-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUS87.353e-11180.75NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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