TCONS_00048015-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048015-protein
Unique Name	TCONS_00048015-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	330

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048015-protein ID=TCONS_00048015-protein|Name=TCONS_00048015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
LQRENGCQWTGTICDMIKRHNCKFIPRNCRNCCETFLNEKDHLTTCVSLI
KEGDCFFKQVGCHFKAINKEDMAKHVIEHSEIHQSVYETDEQRNMEIKHL
LNENKKLKQTVDQLTQRLKNVEENSNQQNNDLLDAIAELAKRSGQPAPDS
EGLTATITESVKTNTENISDLDLKFQLHENSVDDGHLVWKVNNFHQRTTD
AIVGKTRALHSAPCFTSKYGYKFCLRLYLHGDGMGKGTHLSLFLVLMKSE
YDNILEWPFQKKIKFTLINQEDRSKDHVEKMFPNKDSSSFQKPKKDMNIA
SGCPMFMNLNRLQPEGFLKDDSLFVEVKID

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030553	XLOC_030553	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048015	TCONS_00048015	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002083	MATH/TRAF_dom
IPR008974	TRAF-like
IPR012227	TNF_rcpt--assoc_TRAF

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0042981	regulation of apoptotic process
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042981	regulation of apoptotic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..142
None	No IPR available	GENE3D	1.20.5.50		coord: 60..175 e-value: 2.7E-4 score: 20.1
None	No IPR available	CDD	cd00270	MATH_TRAF_C	coord: 185..330 e-value: 7.9974E-63 score: 197.83
IPR002083	MATH/TRAF domain	SMART	SM00061	math_3	coord: 189..312 e-value: 9.5E-16 score: 68.3
IPR002083	MATH/TRAF domain	PROSITE	PS50144	MATH	coord: 184..329 score: 19.88
IPR008974	TRAF-like	GENE3D	2.60.210.10		coord: 176..330 e-value: 2.6E-37 score: 127.7
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 184..329
IPR012227	TNF receptor-associated factor TRAF	PIRSF	PIRSF015614	TRAF	coord: 2..330 e-value: 9.3E-71 score: 236.9

Blast

[Close]

BLAST of TCONS_00048015-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 2.668e-54
Identity = 125/392 (31.89%), Postives = 214/392 (54.59%), Query Frame = 0

Query:    3 RENGCQWTGTICDMI--KRH---NCKFIPRNCRNCC--ETFLNEK--DHLTTCVSLIKEGDCFFKQVGCHFKAINKEDMA-------KHV---------------------IEHSEIHQSVYETDEQRNMEI---KHLLNENKK----LKQTVDQLTQRLK-----------NVEENSNQQNN--DLLDAIAELA---KRSGQPAPDSEGLTATIT---ESVKTNTENISDLDLKFQLHENSVDDGHLVWKVNNFHQRTTDAIVGKTRALHSAPCFTSKYGYKFCLRLYLHGDGMGKGTHLSLFLVLMKSEYDNILEWPFQKKIKFTLINQEDRSKDHVEKMF-PNKDSSSFQKPKKDMNIASGCPMFMNLNRLQPEGFLKDDSLFVEVKID 330
            RE  C    +   MI  ++H   +C  +  +C + C  +T L  +   HL+ CV+      C FK+ GC F+  N++  A       +HV                     +E ++  QS++       +EI   K +L  N+     L++ +D   ++LK           N EE  + +++   L + + EL    K +GQ A ++  L + ++   + +  +   ++D+DL+FQ+ E +  +G L+WK+ ++ +R  +A++GKT +L+S P +T  +GYK C R+YL+GDGMGKGTHLSLF V+M+ EYD +L WPF++K+   L++Q   S+ H+   F P+ +SSSF+KP  +MNIASGCP+F+    L+   ++KDD++F++V +D
Sbjct:  173 REATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVN--APSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561

The following BLAST results are available for this feature:

BLAST of TCONS_00048015-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048015-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRAF3	2.668e-54	31.89	TNF receptor-associated factor 3 OS=Homo sapiens G...	[more]

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TCONS_00048015-protein (polypeptide) - C. hemisphaerica