TCONS_00048306-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048306-protein
Unique NameTCONS_00048306-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048306-protein ID=TCONS_00048306-protein|Name=TCONS_00048306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MKHLIIRRGGLPMTIIPVNHNTSSLATSNTNVSIGGHCHRMTSSDYLGFL
FTALGEIPGLLLCFGLADRLGRRPALSVLCFVSVLAMSLLHACLNRYLLV
GTLFILRAFVTGFIQTVYLYTPEVYPTNIRAIGFGTASSMARIGAIITPF
VSEVLLDTYPHHAIFIYSGLMAVCIFASLLLPIETKGMKLKEFEEESEPN
DNG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030747XLOC_030747Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048306TCONS_00048306Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 39..196
e-value: 1.0E-14
score: 54.2
NoneNo IPR availableGENE3D1.20.1250.20coord: 19..196
e-value: 2.0E-24
score: 85.5
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 1..186
score: 14.546
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 46..182
e-value: 9.91515E-13
score: 63.4869
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 47..196

Blast
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BLAST of TCONS_00048306-protein vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.173e-40
Identity = 73/156 (46.79%), Postives = 102/156 (65.38%), Query Frame = 0 
Query:   38 CHRMTSSDYLGFLFTALGEIPGLLLCFGLADRLGRRPALSVLCFVSVLAMSLL-HACLNRYLLVGTLFILRAFVTGFIQTVYLYTPEVYPTNIRAIGFGTASSMARIGAIITPFVSEVLLDTYPHHAIFIYSGLMAVCIFASLLLPIETKGMKLKE 192
            C  ++  DY+  L+T L E PG+L+   + DRLGR+  ++ LCFV     SLL   C+ R +L   LFI RAF++G  Q  Y+YTPEVYPT  RA+G GT S MAR+GA+ITPF+++V+L++  +  + +YSG   +   AS  LPIETKG  L+E
Sbjct:  365 CEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMA-LCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519
The following BLAST results are available for this feature:
BLAST of TCONS_00048306-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP4.173e-4046.79Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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