TCONS_00048717-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048717-protein
Unique NameTCONS_00048717-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048717-protein ID=TCONS_00048717-protein|Name=TCONS_00048717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MAGIDLVSPEGLRLDGRKCHELRKIICKKGIFVQADGSASIEQGNTKVVA
SVYGPHEVTVRSKALHDSCVINCQYRMASFSTSERKHRNKGDRKSTDISL
MLSKMFETAIMKELYPRSQIDIYIQVIQSDGGNIAASINAATLALIDAGL
PMKDFVCACSSSYVRENFLADINYLEESSGVSRVTLGMLPKSEKVVFFQM
DSRLHKDHLENLLETTKAACLDVWSVLREAVKEHSHKQAITLVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030962XLOC_030962Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048717TCONS_00048717Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 21..151
e-value: 1.0E-35
score: 123.0
IPR027408PNPase/RNase PH domainGENE3D3.30.230.70coord: 1..241
e-value: 6.5E-70
score: 234.8
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 155..217
e-value: 3.8E-8
score: 33.1
IPR015847Exoribonuclease, phosphorolytic domain 2SUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 151..236
NoneNo IPR availableCDDcd11370RNase_PH_RRP41coord: 11..234
e-value: 2.30687E-128
score: 364.557
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 9..178

Blast
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BLAST of TCONS_00048717-protein vs. Swiss-Prot (Human)
Match: EXOS4 (Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 284.648 bits (727), Expect = 2.015e-97
Identity = 129/243 (53.09%), Postives = 181/243 (74.49%), Query Frame = 0 
Query:    1 MAGIDLVSPEGLRLDGRKCHELRKIICKKGIFVQADGSASIEQGNTKVVASVYGPHEV-TVRSKALHDSCVINCQYRMASFSTSERKHRNKGDRKSTDISLMLSKMFETAIMKELYPRSQIDIYIQVIQSDGGNIAASINAATLALIDAGLPMKDFVCACSSSYVRENFLADINYLEESSGVSRVTLGMLPKSEKVVFFQMDSRLHKDHLENLLETTKAACLDVWSVLREAVKEHSHKQAITL 242
            MAG++L+S +G R+DGR+  ELRKI  + G+F QADGSA IEQGNTK +A VYGPHE+   R++AL D  ++NCQY  A+FST ERK R  GDRKS ++ L L + FE AI+ +L+PRSQIDIY+QV+Q+DGG  AA +NAATLA++DAG+PM+DFVCACS+ +V    LAD++++EE++G  ++ L +LP S ++   +MD+RLH+DHLE +LE    A  DV ++L   V++H  + +I L
Sbjct:    1 MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 243
The following BLAST results are available for this feature:
BLAST of TCONS_00048717-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS42.015e-9753.09Exosome complex component RRP41 OS=Homo sapiens GN... [more]
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