TCONS_00048747-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048747-protein
Unique Name	TCONS_00048747-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	792

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048747-protein ID=TCONS_00048747-protein|Name=TCONS_00048747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=792bp
MASDDTQTVGAFISSLVEDGIGSQAFMGSTFDSDFILLAEFCEMEGPKPI
FTIPSVFNSTFNLNTFAVRIMSVDCVSIMQTTDFTNFKVAGDIQVVLTEQ
GEGAVAYVHHFVLYDICARGFVRPFCLSYIMKNHAELLSMYEKICTMFTL
VSGLFHFGNALSFINDLMLRLQHLQHLKKVLAEKSYDIFVDDKVLTESQK
NAITIKALDDAMYQLHQLIIIFKSYVEGTSFVDHRGLFNERYRDILQKLD
ASDLLHSTPNDNFTDQTMNQMTELATEEMEESARPSHNVPSEVISSILGK
KYDKRLRNLSELSDVTNDIGLDVLRYSLHVFTHRDLSLSNLFTVKSSKAE
QASKLTIGSTEFPVLPCVSNHVECCTINTPSQLTSISTFLRHFLDIHKHE
ALVETPVKEKQKDNMDDGEQVTDTGYQFYGELSSSFLSLLRYTSISLPAV
SASDSTYSKVGSFVNIPSMVESVDGIGSTSPVTSQNRQTPHSENSSADSY
KDALCYPESIASSNNSSLDSANQDGAGAPTYCHSISVVSTDTVNIPTNAV
GDDVKEMMKSSRIPLVKLRDRFSYLPHIVYSFFLGRPVAVVGKESTSKSV
SSFVYGLASMLPNNPVKPKRVCPILSRKLTIRDLDTYGIFGILKSGKEKY
PIPMALRPYLSIVDLEKDTVDAPLYQGDILSTMFDTGRNFSERSFRKFIK
QTWAELISEAYVRFTNQYTHALSPLTAHSASLNLSCDKQILNFFVDTLRV
QILHAYLEEDDLMDLTTDAIRLNRKKCQTIPNQFKKKHTSKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030983	XLOC_030983	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048747	TCONS_00048747	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 475..499

Blast

[Close]

BLAST of TCONS_00048747-protein vs. Swiss-Prot (Human)
Match: SMCR8 (Guanine nucleotide exchange protein SMCR8 OS=Homo sapiens GN=SMCR8 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.597e-32
Identity = 99/302 (32.78%), Postives = 151/302 (50.00%), Query Frame = 0

Query:   28 GSTFDSDFILLAEFCEMEGPKPIFTIPS---VFNSTFNLNTFAVRIMSVDC----VSIMQTTDFTNFKVAGDIQVVLTEQGEGAVAYVHHFVLYDICARGFVRPFCLSYIMKNHAELLSMYEKICTMFTLVSGLFHFGNALSFINDLMLRLQHLQHLKKVL-AEKSYDIFVDDKVLTESQKNAITIKALDDAMYQLHQLIIIFKSYVEGTSFVDHRGLFNERYRDILQKLDASDLLHSTPNDNFTDQTMNQMTELATEEMEESA-------RPSHNVPSEVISSILGKKYDKRLRNLSELSD 314
            G+ F  DFIL++EF E  GP+P+ TIP+   VF  TF+LN F++RIMSVD     V     + +       D +VVL +  EGA AYVHH  LYD+ ARGFVRPFC++YI  +  +++  ++++   F+  S     GN  +F  +L  +L+ L + + VL  E       +DK    SQ           A+ + ++L  + KS +E      H+ L  +      +KL   DL      ++  DQ     T   T   +ESA       RP++    ++I +   K +DK+L+ L EL D
Sbjct:   50 GAKFSRDFILISEFSEQVGPQPLLTIPNDTKVFG-TFDLNYFSLRIMSVDYQASFVGHPPGSAYPKLNFVEDSKVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADQHKIMQQFQELSAEFSRASECLKTGNRKAFAGELEKKLKDLDYTRTVLHTETEIQKKANDKGFYSSQ-----------AIEKANELASVEKSIIE------HQDLLKQIRSYPHRKLKGHDLCPGE-MEHIQDQASQAST---TSNPDESADTDLYTCRPAYT--PKLIKAKSTKCFDKKLKTLEELCD 327

The following BLAST results are available for this feature:

BLAST of TCONS_00048747-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048747-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMCR8	1.597e-32	32.78	Guanine nucleotide exchange protein SMCR8 OS=Homo ...	[more]

You are here

TCONS_00048747-protein (polypeptide) - C. hemisphaerica