TCONS_00048830-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048830-protein
Unique NameTCONS_00048830-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048830-protein ID=TCONS_00048830-protein|Name=TCONS_00048830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MKKNTIFEALFLVITCIPSLTLAIEPITVGIAVVAGGGAIAGKWAYCQFK
ECCTPKWTNHSSHTMTDSFRDNLIGQHLVTHIVAKSIRKHLQQENPKKAL
VLSFHGWTGSGKNFVADIIAKHVYKKGVQSKFITKYIAGNDFPHKDELKQ
YKDRVKREIVEKTKACDHSMFIFDEIEKMPAGLIDVLKAFIDFHQDVNGV
DFRKNIFIFIGNTGGDEINKEVFKHFRSGESRQDITSKQMEFLLSIDAFN
NNGGLKDANILLAGLVDFFVPFLPMEREHVKQCVRAELIRRNHALNEKIV
NEVAKEMDYFPKKNPMFSTTGCKKVSKKMDLILD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031039XLOC_031039Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048830TCONS_00048830Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001270ClpA/B
IPR010448Torsin
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001270ClpA/B familyPRINTSPR00300CLPPROTEASEAcoord: 102..120
score: 39.79
coord: 201..215
score: 36.27
coord: 172..190
score: 33.1
NoneNo IPR availableGENE3D3.40.50.300coord: 53..310
e-value: 1.8E-14
score: 53.3
NoneNo IPR availableCDDcd00009AAAcoord: 74..212
e-value: 4.03965E-6
score: 43.6739
IPR010448TorsinPFAMPF06309Torsincoord: 47..173
e-value: 1.8E-45
score: 154.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 68..307

Blast
[Close]
BLAST of TCONS_00048830-protein vs. Swiss-Prot (Human)
Match: TOR1B (Torsin-1B OS=Homo sapiens GN=TOR1B PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.718e-91
Identity = 132/312 (42.31%), Postives = 204/312 (65.38%), Query Frame = 0 
Query:   25 EPITVGIAVVAGGGAIAGKWAY----CQFKECCTPKWTNHSSHTMTDSFRDNLIGQHLVTHIVAKSIRKHLQQENPKKALVLSFHGWTGSGKNFVADIIAKHVYKKGVQSKFITKYIAGNDFPHKDELKQYKDRVKREIVEKTKACDHSMFIFDEIEKMPAGLIDVLKAFIDFHQDVNGVDFRKNIFIFIGNTGGDEINKEVFKHFRSGESRQDITSKQMEFLLSIDAFNN-NGGLKDANILLAGLVDFFVPFLPMEREHVKQCVRAELIRRNHALNEKIVNEVAKEMDYFPKKNPMFSTTGCKKVSKKMDL 331
            EPITVG+A+ A   AI G  +Y    C+F ECC  +   ++S    D   + L GQHL T ++ K++      +NPKK L LS HGW G+GKNFV+ I+A++++ KG++S F+  +++   FPH+ ++K Y+D++++ I     AC +S+FIFDE++K+  G+ID +K F+D+++ V+GV +RK IFIF+ N GGD I K     +R+G  R+DI  K +E +LS+  FNN + GL  + ++   L+D+F+PFLP+E  HVK CVRAE+  R  A++E IV  VA+EM +FP+   ++S  GCK V  ++D 
Sbjct:   26 EPITVGLAIGAAS-AITGYLSYNDIYCRFAECCREERPLNASALKLD-LEEKLFGQHLATEVIFKALTGFRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLHPKGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQKWIRGNVSACANSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRKREDIQLKDLEPVLSVGVFNNKHSGLWHSGLIDKNLIDYFIPFLPLEYRHVKMCVRAEMRARGSAIDEDIVTRVAEEMTFFPRDEKIYSDKGCKTVQSRLDF 335
The following BLAST results are available for this feature:
BLAST of TCONS_00048830-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TOR1B1.718e-9142.31Torsin-1B OS=Homo sapiens GN=TOR1B PE=1 SV=2[more]
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