TCONS_00048843-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048843-protein
Unique NameTCONS_00048843-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2295

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048843-protein ID=TCONS_00048843-protein|Name=TCONS_00048843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2295bp
RCLNKNCYYYSWSSWSATCGNGVKRTRQLRKTSNSYYTVKAVSECSKYKT
TCDNNLIETKNLAKCPVPCKHKSCSYYGWSSWSATCGSVERSRKRYSLKD
VTTYVKESKDCDKYPKSCELYDKQTKTLAKCPIRCLNKNCYYHSWSSWSA
TCGNGVKRTRQLRKTSNSYYTVKAVSECSKYKTTCDNNLIETKNLAKCPV
RCSYKNCYYFGWSSWSATCGSVKRQRRYRYSRNAVVNVKDEAACDAYTKT
CASYLHQNKTLSVCPVKCQYKECNYNSWSTWSMPCGKSHRSRKLRSAVNK
ITYFYNPSYCDRYSKSCQSDEKEEKTFVECPKASCKLDLGFILDESGSIS
VSDFKKETDFVRQMTLPFNIGVKNTRVSLITYSSGVRFHFKLRDYQGYNK
DGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITD
GRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIASSSDHVMR
ISSINALQGILGKLQSAVCKEIECKYKECVYQNWSPWSQTCGATSRSRQL
KMAYNRTKIQHGGCSGLLTSCENMEKEQKTLDKCPPYNTPEKECTLDLGA
ILDESGSIGSNTNYRKETNFIKDLAKELTIGPSNTRVSVITFSSAARLRF
KFNDYEGYNRKALYNALDGLRWSKGGTQTVKALQLAQKHMFSEANGQRKD
VSKVLLVVTDGRSATGASNIKRASDALSKQGVNIIAIGVGAAYQTELKAL
ATDDSNVFKVGSLSELKNALWSVKRASCAPVKCQYKICTYSAWSKWSATC
GVTAQRTRALTKSENAVKERLGGCAGLPTSCDSRETESKTLKSCSSFLVM
CDHYDCSWETWSAWSATCGQNMNRKRYPIEKKETKQYIAKCPSDLNQKPC
TKEPQSQKQSTKCPCRVKKCDWRDWSLWSGTCGDVKRTRMLRSYHEFNYD
YDCVELQSKEGCQLMENSTETQTVTKNPCLKECKYASCSYSEWSMWSAQC
GKVNRSRDLNTDMMTSWRESCDGLEKDCSKHTEVYQERSQVCDCSYVTCE
PGPWSFWSAQCGQAERKRDIKTVKKTVQKMSCEGLQQTCPNDDEAEERMT
LCECPYVQCKAEQWSQWDAQCGKAKRSRKITEVKATIKKSSCVDLQQTCP
SDAEEETRETLCNCSKAVCTWKNWSTWSATCGSSTRSRSIKTTMTKVAQY
SCKDVPTTCEQQPEMEDRKTKCPCDIQTCSWKPWGSWSATCGTASRTREL
NKQRKIVEAFTCSEARATEGCTETETVQRQSVTREPCTQTCKYVSCSYNE
WSSWSSECGEKVTRTRSVNTQQLSKELVSCAGLTTSCVHFKDQSQETAKQ
CNCSYVDCVPRSWSTWSTFCGEGTRRRVVLPTRKIVQQYSCDGLNQQCKT
PMETEKRSEMCNCTKVDCVPEEWSQWSAVCGKITRKRNIEKESSELMRLS
CDGLQTECAKTEETEEKEIPCSCDQALCSWNEWGAWSATCGDSMTRLRSI
NTQIQKVHKLSCDGLRKSCDVFKNGTQNIRITCPEPPQKSHECKYVDCVP
GPWTEWSSDCGSGERMREILAVQRTTMRFNCDGLKQECSSEVETQERNQL
CECTYLECHSGTWSSWNTKCGKGHRTRPINVIEKSLERYSCEGLNQHCKE
EDVEERNQLCECESVDCVAAEWSSWSAECGKASRKRAINPVTKTVKQYSC
EGVKTTCEKDVETEDRNIKCTCSYVECNVGQWSEWSSECGDASRSRPINA
VVKSIQKYSCDGLQQTCEKDEESETRSTMCTCDYVECVEGKWSEWDKKCG
QSMKRTRLINSETKTVQQKSCDGLITKCDKKEEVETQDKLCECSYVKCER
SDWSDWSASCGIAQRESSLVAVAATIKQFSCDGLAQKCDPDTKVEKRTTQ
CTCNTVECSYSEWSSWSAQCGDGKRSRKSVSLPKTVQRLDCSNVKTTCPN
DVQEETRKELCECESVDCVASSWSSWSAECGKAQRERSINPITKTVKQYS
CEGVKTTCEKDVETEDRNIKCTCSYVECNVGQWSEWSSECGDASRSRPIN
VVVKTQERYSCDGLKQTCEKEEEVEERSTKCKCDYVECVPGDWSEFSAPC
GKGITRSRPINVIHKTIMKDTCEGLQHSCPKAEETESKDEKCSCATIECN
WSKWSDWSATCGERSRERKIIGKLTTVESLSCDGLPKKCEEKPEIEKHAS
FQCPTNPGPQHDGGCFVQYRSIGCFHDDQANPRPLPELILTERDPSHRAW
NGKDIFSIVLFHLYPEFQLFVCVFFRSFKLISTLYSPGAITLLID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031043XLOC_031043Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048843TCONS_00048843Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00453VWFADOMAINcoord: 376..390
score: 32.82
coord: 337..354
score: 42.31
coord: 444..452
score: 63.25
NoneNo IPR availableGENE3D2.30.90.10coord: 7..61
e-value: 0.14
score: 12.2
coord: 1968..2018
e-value: 0.39
score: 10.8
coord: 529..592
e-value: 0.071
score: 13.2
coord: 1296..1351
e-value: 0.47
score: 10.6
coord: 1167..1225
e-value: 0.55
score: 10.3
coord: 1908..1959
e-value: 0.11
score: 12.6
coord: 268..326
e-value: 0.59
score: 10.2
coord: 2150..2216
e-value: 0.0024
score: 17.9
coord: 1476..1547
e-value: 0.041
score: 14.0
coord: 854..913
e-value: 0.31
score: 11.1
coord: 140..194
e-value: 0.23
score: 11.6
coord: 787..840
e-value: 0.18
score: 11.9
coord: 1667..1717
e-value: 0.51
score: 10.4
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 596..758
e-value: 3.86629E-38
score: 142.045
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 337..498
e-value: 7.27336E-42
score: 152.831
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 595..768
e-value: 1.9E-38
score: 143.7
coord: 336..519
e-value: 1.6E-37
score: 140.7
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 330..526
e-value: 3.1E-36
score: 124.6
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 593..783
e-value: 4.9E-34
score: 117.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 338..510
e-value: 2.0E-40
score: 138.8
coord: 597..768
e-value: 2.1E-37
score: 129.0
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 597..773
score: 29.519
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 338..514
score: 30.857
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 324..522
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 581..778
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 1610..1661
e-value: 9.4
score: 0.7
coord: 2151..2190
e-value: 0.31
score: 13.8
coord: 145..199
e-value: 6.9
score: 1.8
coord: 1550..1602
e-value: 9.9
score: 0.5
coord: 790..845
e-value: 11.0
score: 0.1
coord: 1231..1288
e-value: 1.7
score: 7.2
coord: 79..132
e-value: 1.2
score: 8.5
coord: 1908..1962
e-value: 6.2
score: 2.3
coord: 1363..1403
e-value: 3.5
score: 4.5
coord: 12..66
e-value: 6.9
score: 1.8
coord: 922..980
e-value: 1.9
score: 6.9
coord: 534..585
e-value: 1.7
score: 7.2
coord: 1480..1520
e-value: 3.0
score: 5.1
coord: 212..265
e-value: 2.3
score: 6.0
coord: 1792..1829
e-value: 6.1
score: 2.3
coord: 2090..2130
e-value: 4.4
score: 3.6
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 2083..2149
e-value: 0.11
score: 12.4
coord: 1226..1290
e-value: 0.2
score: 11.6

Blast
BLAST of TCONS_00048843-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.943e-37
Identity = 128/490 (26.12%), Postives = 224/490 (45.71%), Query Frame = 0
Query:  338 DLGFILDESGSISVSDFKKETDFVRQMTLPFNIGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIAS--SSDHVMRISSINALQGILGKLQSAVCKEIECKYKECVY--QNWSPWSQTCGATSRSRQLKMAYNRTKIQHGGCSGLLTSCENMEKEQ-----------------------------KTLDKCPPYNTPEK--------ECT------LDLGAILDESGSIGSNTNYRKETNFIKDLAKELTIGPSNTRVSVITFSSAARLRFKFNDYEGYNRKALYNALDGLRWSKGGTQTVKALQLAQKHMFSEANGQRKDVSKVLLVVTDGRSATGASNIKRASDALSKQGVNIIAIGVGAAYQTELKALATD--DSNVFKVGSLSELKNALWSVKRASC 778
            DL F++D S S+  ++FK   DF+  +   F+IG + TRV ++ YSS  R  F L  Y  Y +D L  A+ ++  KGG T T  A+       FT  +GAR    KV ++ITDG+S      V  PA +L+   V +F++G     ++ EL  IAS  S +HV  +++ +A+  I  ++ S VC  ++ +  E V   +   P S        S+ +K+ +N +     G   +LT      ++                              K +    P +  EK        EC+       D+  ++D S SIG   N+ K   F++ L K   I P+  ++S++ +S      F    +     + +  A++   +  G T T KA+   ++ +F  + G R +V KV++++TDG+S+      +  +  L    V I A+GV  A ++EL+A+A+   +++VF V      +   + + ++ C
Sbjct:  140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQY--YQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQ---DEVEIPARELRNVGVEVFSLGI-KAADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYSIGI-ANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFT--KVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDA---FRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVEDFDAFQRISFELTQSIC 617          

HSP 2 Score: 107.071 bits (266), Expect = 1.129e-22
Identity = 68/202 (33.66%), Postives = 108/202 (53.47%), Query Frame = 0
Query:  325 KTFVECPKA-SCKLDLGFILDESGSISVSDFKKETDFVRQMTLPFNIGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIAS--SSDHVMRISSINALQGILGKLQSAVCKEIE 523
            K  VEC +    K D+ F++D S SI +++F K   F+  +   F I     ++SL+ YS      F L+ +     + + +A+N    +GG TNT +A+     K+F    G+R ++ KV+++ITDG+S+    + R PA  L+ + V IFAVG  + V S EL AIAS  +  HV  +   +A Q I  +L  ++C  IE
Sbjct:  426 KVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFT--KVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSS---DAFRDPAIKLRNSDVEIFAVGVKDAVRS-ELEAIASPPAETHVFTVEDFDAFQRISFELTQSICLRIE 621          

HSP 3 Score: 89.3521 bits (220), Expect = 2.213e-17
Identity = 76/236 (32.20%), Postives = 110/236 (46.61%), Query Frame = 0
Query:  335 CKLDLGFILDESGSISVSDFKKETDFVRQMTLPFN-IGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIAS--SSDHVMRISSINALQGILGKLQSAVCKEIECKYKECVYQNWSPWSQTCGATSRSRQLKMAYNRTKIQHGGCSGL 567
             K D+ F+ D S SI   +F K   F+      F+ I     +VS + YS  V+  FKL  Y   +K     AL  +  +GG T T +AL     K+ T ESG R ++ KVLVV+TDGRS      V+K A  ++++  ++F VG   +V+ +EL  IAS  S  HV  +    + + I   L + VC   E     C      P     G TS   ++  AYN T+       G+
Sbjct: 2320 AKADIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYN--DKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQ---DEVKKAALVIQQSGFSVFVVGVA-DVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVC---ETATSSC------PLIYLDGYTSPGFKMLEAYNLTEKNFASVQGV 2540          

HSP 4 Score: 85.5001 bits (210), Expect = 3.564e-16
Identity = 58/191 (30.37%), Postives = 96/191 (50.26%), Query Frame = 0
Query:  335 CKLDLGFILDESGSISVSDFKKETDFVRQMTLPFNIGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIASSSD--HVMRISSINALQGILGKLQSAVCKEIE 523
             + D+  ++D S SI  ++F+    F+ ++   F+IG K  +++L  YS   R  ++L  ++  +K  L QA+  L  KGG T T  AL     + F  ++G RP   K+ V+ITDG+S      V  P+  LK   V +FA+G   N +  EL  IA+  D  H   ++   +L  I+  L   +C  ++
Sbjct: 1196 AEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHR--DKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQ---DDVEAPSKKLKDEGVELFAIGI-KNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVK 1380          
The following BLAST results are available for this feature:
BLAST of TCONS_00048843-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA11.943e-3726.12Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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