TCONS_00048998-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048998-protein
Unique NameTCONS_00048998-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048998-protein ID=TCONS_00048998-protein|Name=TCONS_00048998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MLQVLLIRLTTLCILMSLCIASSYEEKTVYTQALLTVSYFKGGKKPDPTK
VAGKYAKRSGKQQVEGVLYFSNTINWCDEKSAKKYKFPKEKWIALIPRQQ
TEPNKTCTLSLKLLTAKKMNASGVVVYNSIPGEVPAIEDDTRDVITVMID
REAGNELRKLVLDSSITDIKCKVTVGTHYVDRRWKVSRTSVLFVLVSFIL
LMCISLAWLVFYYVQRFRHIYRNDRKEKQLLSAAKKAISKLKTRGYQESP
KEDLEESCAVCLECYKEGETLRILPCKHEFHKACIDPWLLNHRTCPMCKS
NILKSLGVEMPENETNGSDDRYVRGFVPPSTTTIEASQSNNGEPSVVVVV
HEQQQVPQAWAEPSIAQPSPDNRYSASSSSSDTDSDRSTVALVSFEQRV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031122XLOC_031122Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048998TCONS_00048998Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 258..298
e-value: 4.8E-8
score: 42.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 257..299
e-value: 1.6E-11
score: 44.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 258..299
score: 12.725
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 258..302
e-value: 5.47323E-12
score: 59.3816
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 233..307
e-value: 6.3E-20
score: 69.9
NoneNo IPR availableGENE3D3.50.30.30coord: 31..188
e-value: 3.1E-10
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 358..399
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 252..306

Blast
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BLAST of TCONS_00048998-protein vs. Swiss-Prot (Human)
Match: RN150 (RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 1.805e-66
Identity = 148/411 (36.01%), Postives = 211/411 (51.34%), Query Frame = 0 
Query:    9 LTTLCILMSLCIASSYEEKTVYTQALLTVSYFKGGKKPDPTKVA---------------GKYAKRSGKQQVEGVLYFSNTIN---WCDEKSAKKYKFPKEKWIALIPRQQTEPNKTCTLSLKLLTAKKMNASGVVVYNSIPGEVPAI---EDDTRDVITVMIDREAGNELRKLVLDSSITDIKCKVTVGTHYVDRRWKVSRTSVLFVLVSFILLMCISLAWLVFYYVQRFRHIYRNDRKEKQLLSAAKKAISKLKTRGYQESPKEDLEE--SCAVCLECYKEGETLRILPCKHEFHKACIDPWLLNHRTCPMCKSNILKSLGVEMPENETNGSD---DRYVRGFVPPSTTTIEASQSNNGEPSVVV-----------VVHEQQQVPQAWAEPSIAQPSPDNRYSASSSSSD 382
            L + C +  LC+  +  EK  +  A + ++Y +    PDP   A               G+Y + S KQ   G +  +++ +    CD  +        + WIALIP+        CT   K+  A   NAS VV++N        I        D++ +MI    G E+  L L+ +IT +   +T+GT  + +   VSRTSV+FV +SFI+LM ISLAWLVFYY+QRFR+    DR +++L  AAKKAISKL+ R  ++  KE   +  +CAVC+E YK  + +RILPC+H FHK+C+DPWLL+HRTCPMCK NILK+LG+  P N     D   D       PP+     AS +   E SV +           VV +   +PQ   E  +   +   +  A SS SD
Sbjct:   18 LLSFCFVHLLCLDFTVAEKEEWYTAFVNITYAE--PAPDPGAGAAGGGGAELHTEKTECGRYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPTRGKNWIALIPKGN------CTYRDKIRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSL-LERNIT-VTMYITIGTRNLQKY--VSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGI--PPNADCMDDLPTDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQVVQDTDPIPQ---EGDVIFTTNSEQEPAVSSDSD 411
The following BLAST results are available for this feature:
BLAST of TCONS_00048998-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1501.805e-6636.01RING finger protein 150 OS=Homo sapiens GN=RNF150 ... [more]
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