TCONS_00048998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048998
Unique NameTCONS_00048998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048998 ID=TCONS_00048998|Name=TCONS_00048998|organism=Clytia hemisphaerica|type=transcript|length=3470bp
TCTGGATTCgcgtttttgaaaataaaggtcTAAAGTAGCAATTTCTCTTT
TTATCCCACTCTTCGTAGGGACTCCTCTTCGTAGGTTGAAGAGCGATTTC
GAGACGTTCAAAACATTGGCTGATGAGCGAGCGAGGAAAAATTATTTAAG
TACAAATTTTTGACAAGGAAATATTTGATGGAAAGTGACTAACAAAATAC
TAACTTTCGAGGTTTACTTATTGGAGTATTTACTCTTTGGAGTTTATTGG
AAATATGTTGCAGGTTCTGCTAATAAGACTTACTACACTATGTATATTGA
TGTCACTATGTATAGCAAGTTCATACGAGGAAAAAACTGTTTACACACAA
GCCTTGCTGACTGTTTCCTATTTTAAAGGAGGTAAAAAGCCTGACCCTAC
CAAGGTTGCTGGTAAATATGCTAAAAGATCAGGCAAACAACAAGTTGAAG
GTGTTTTATACTTTTCAAACACTATAAACTGGTGCGAtgaaaagtcagca
aaaaagtataaatttccaaaagaaaaatggaTTGCCTTGATTCCAAGACA
ACAGACAGAACCAAACAAAACATGTACACTTTCCCTTAAATTATTGACTG
CAAAAAAGATGAACGCTTCAGGTGTTGTAGTATATAATAGCATTCCAGGT
GAGGTGCCAGCTATTGAAGATGACACGCGTGATGTTATAACAGTTATGAT
TGACAGGGAAGCTGGTAATGAATTAAGGAAACTTGTTTTAGATAGTTCTA
TTACAGACATTAAATGTAAAGTAACAGTAGGTACTCATTACGTCGATCGC
AGATGGAAAGTTAGCAGGACATCTGTCTTATTTGTTTTGGTATCATTCAT
CTTGCTCATGTGCATATCACTTGCCTGGCTGGTATTTTACTATGTTCAAC
GATTTAGACATATCTACAGAAATGATAGAAAAGAGAAACAACTTCTCAGT
GCTGCTAAGAAAGCAATTTCTAAGCTAAAGACAAGAGGATATCAAGAAAG
CCCAAAAGAGGATTTAGAAGAATCATGTGCAGTCTGTTTAGAATGTTACA
AAGAGGGGGAAACACTGCGCATTTTACCATGCAAACACGAGTTTCATAAA
GCTTGTATCGACCCGTGGCTGCTGAACCATCGTACATGCCCGATGTGCAA
AAGCAACATCTTGAAATCTCTTGGAGTGGAGATGCCTGAGAACGAGACGA
ACGGTTCTGACGATAGATATGTTCGTGGGTTCGTGCCACCATCCACGACT
ACTATAGAAGCCAGCCAATCCAACAATGGGGAGCCTTCAGTTGTTGTAGT
GGTGCACGAGCAACAACAAGTCCCTCAAGCATGGGCTGAACCCTCCATTG
CGCAACCCAGCCCTGACAATCGATATTCAGCTTCGTCGAGTTCAAGCGAT
ACCGATTCTGATCGATCAACAGTCGCCCTCGTTTCTTTTGAACAACGGGT
TTGAATAAATTTATGGTGCTGGCACAGTTTTTTTGTATTCTACTTAGAAA
ATTTCTCATAGCGTGgtgaatgtttttaattttttttctaaccaACCTAA
TATGAGAGAGTACTTTGTACCACACAAAAGCGTTGATCGCTTGTTTCAGT
TTTATCCTGTTGTGTTGGTGGGGCCATTTCCTTTGGCTTCAAAACTTTGA
TATGTATTGACTTTGAATGACGTAGAAGAGCCAATTTCTTAATCGCCTCT
TCTCATTAGACACTAATCGAATTCCGGTTGTTTGAAATCACGAATTTCCG
GGTCTGCCACCACACGGTGAAATATTCATCTGTGATAGTTGTTACTAAAT
GTGGATGGCGTTCTTTCNGGTCTGCCACCACACGGTGAAATATTCATCTG
TGATAGTTGTTACTAAATGTGGATGGCGTTCTTTCGCAACCAATACATTA
TGACATTTTACTCGATCATTCTTGACTCTGATGTAATTATAAACAATGAT
CTGGTAAAACGATTTAGGAATTCCTATTTCTTTTGTTCGTTTTCGAACTG
AAGAAAATTCGAAGAGTATTTCTTTTTTGAGAGTTGGCAAGGAGCTTTAT
GGACTGATGACAGGCTAAAGTTCGTACATAGTGTATGTGATTGAAAAGTA
TGGCAAACAGGTTTTGGCATAATCATGGTCGGGAAAACGAAGCTCGCTGT
CAACTTAATAAAAACGACCTTTCTTTTGTGATGTTGAAATGTTTAAAAGG
TATTGCCAAAACTCGATTCGTTTTGCCTTNGAAGCTCGCTGTCAACTTAA
TAAAAACGACCTTTCTTTTGTGATGTTGAAATGTTTAAAAGGTATTGCCA
AAACTCGATTCGTTTTGCCTTGCTATGAAACGAGTTGCAAAATTGGTAGA
ATATCATcgaaatttcatttgtttatacTGATGTTTGTCTCATTTGTTTG
TCTTACAAATCCAACCTTAAAAGGAGTTAAATTAAAGAAATGTCTTTTTA
GTAACAGCAATGTTTTACGCATATTTTAATCCGgtaattttttgatattt
taccgAGAGGTTTAGACAGAAGCTTATCGAATTATGACTTTTTTGCGTAC
TTggtataaaaactttttaagatgAAAGTTACCTATAAATTATTCAGTAA
CTTTTAACCCATTGAGAACATCCAGGTTTTTTAAGTAAGTTAAAGTTCTT
TCAGAGGGATAATCATTTCTAGATAAAACTTTAGCGAGTCCGTGCTGGAA
AAATCATGCCTTTAGAACGAActagtttgtttatatttatattttttgtc
ttATTGTTTTTATCGTTTAGTTCTAAACGGTCTACATCAATCCTTAACCA
TAATCGCTATTTTACGCGATTTTTTCCAGAAACTTGTATTTTACTATACG
TTCAACGGACGTTAACGTAATTAACGAAACGATCCTTCTTTTCGACGATT
CCTGTCcaatcaaaattaaaacataATACACTTGATTGACTTGACGCCCC
CGCACCAGTGTTTTTTGTTGTATTGGACCTTATCCATcctccccaaattt
tccaagaCCGCCTTTTCCCACGTTTATAGGTCACCTTAAAGTATACTAGA
TATAGAACCATTCTTGCTCCCACTACAAATAGCGTCCAAAAAATATACCC
GGGATTTTTTGCGTAATAAATTTGGTCGTCAATAATACTCCGATAATATA
AGGtatattaattaattttttttcttttttgtaaatattaacgttgaatt
gttttaaaaattttcgacTAGATTTTTTGTCAGATAAAAGAAAGGTCGAT
AAAATCTCACACTTTTGTGTTTACaacttcaaatttttgcttcatccgtt
ttaccaccctaaactcgatccaatattttttttacacatttttctattgt
ctttaggtgcagaaaaaagactgggatggttttaggttggtaaaacggac
aaaaaaatgcccgcgcggctacggtcgaaaaggtgtataaaacACAAAAA
CTTTAATGTGTAGATGCGTG
Run BLAST on NCBI

protein sequence of TCONS_00048998-protein

>TCONS_00048998-protein ID=TCONS_00048998-protein|Name=TCONS_00048998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MLQVLLIRLTTLCILMSLCIASSYEEKTVYTQALLTVSYFKGGKKPDPTK
VAGKYAKRSGKQQVEGVLYFSNTINWCDEKSAKKYKFPKEKWIALIPRQQ
TEPNKTCTLSLKLLTAKKMNASGVVVYNSIPGEVPAIEDDTRDVITVMID
REAGNELRKLVLDSSITDIKCKVTVGTHYVDRRWKVSRTSVLFVLVSFIL
LMCISLAWLVFYYVQRFRHIYRNDRKEKQLLSAAKKAISKLKTRGYQESP
KEDLEESCAVCLECYKEGETLRILPCKHEFHKACIDPWLLNHRTCPMCKS
NILKSLGVEMPENETNGSDDRYVRGFVPPSTTTIEASQSNNGEPSVVVVV
HEQQQVPQAWAEPSIAQPSPDNRYSASSSSSDTDSDRSTVALVSFEQRV
Run BLAST on NCBI

transcript from alignment at scaffold_15:418774..425813+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048998 ID=TCONS_00048998|Name=TCONS_00048998|organism=Clytia hemisphaerica|type=transcript|length=7040bp|location=Sequence derived from alignment at scaffold_15:418774..425813+ (Clytia hemisphaerica)
TCTGGATTCgcgtttttgaaaataaaggtcTAAAGTAGCAATTTCTCTTT
TTATCCCACTCTTCGTAGGGACTCCTCTTCGTAGGTTGAAGAGCGATTTC
GAGACGTTCAAAACATTGGCTGATGAGCGAGCGAGGAAAAATTATTTAAG
TACAAATTTTTGACAAGGAAATATTTGATGGAAAGTGACTAACAAAATAC
TAACTTTCGAGGTTTACTTATTGGAGTATTTACTCTTTGGAGTTTATTGG
AAATATGTTGCAGGTTCTGCTAATAAGACTTACTACACTATGTATATTGA
TGTCACTATGTATAGCAAGTTCATACGAGGAAAAAACTGTTTACACACAA
GCCTTGCTGACTGTTTCCTATTTTAAAGGAGGTAAAAAGCCTGACCCTAC
CAAGGTTGCTGGTAAATATGCTAAAAGATCAGGCAAACAACAAGTTGAAG
GTGTTTTATACTTTTCAAACACTATAAACTGGTGCGAtgaaaagtcagca
aaaaagtataaatttccaaaagaaaaatggaTTGCCTTGATTCCAAGACA
ACAGACAGAACCAAACAAAACATGTACACTTTCCCTTAAATTATTGACTG
CAAAAAAGATGAACGCTTCAGGTGTTGTAGTATATAATAGCATTCCAGGT
GAGGTGCCAGCTATTGAAGATGACACGCGTGATGTTATAACAGTTATGAT
TGACAGGGAAGCTGGTAATGAATTAAGGAAACTTGTTTTAGATAGTTCTA
TTACAGACATTAAATGTAAAGTAACAGTAGGTACTCATTACGTCGATCGC
AGATGGAAAGTTAGCAGGACATCTGTCTTATTTGTTTTGGTATCATTCAT
CTTGCTCATGTGCATATCACTTGCCTGGCTGGTATTTTACTATGTTCAAC
GATTTAGACATATCTACAGAAATGATAGAAAAGAGGTTAACTGAATATTT
TTACTCTTTTAACTTTAAGACAGTGTCTTATACGGTCCCTTAAGGTTAGG
CCTTGATTTTACCCTAAAGTCAAAATAATTCTGCACATGGGTCGTTGTTT
GAGGCCAGgtaaaatttccgggaaatggCCTATTCTGCGGTGTATGGATC
TAGGTGGGTGTCTTCTCCCCACAGAATATTTTCTTGGGCAGTTGTTCTTA
AAAtcagttttcaaggttggcccTTTCCGCATTATTATAATGATGTTATG
TCTTAGTATATGTATATACTAAAGATTGGGCAAGGTCTTAGTATGCTATA
TTAATATAAACAAGACTGGGGAAATCAAACTGACCAAAAGGGCAACAGCC
TAATAATATTTTGCAATATGATATGTTATTATCTCTAGCTGGAATAAGGT
CTATTGAACATAATCCCTGGTTTAACGTTTACTCTCACTCGAAGTACGGT
CAATTTGGGGGCAGTTTTCGCAAAATTGATCCTTGTATGATTTAAAAACA
AGCACTTGGATTAAAATgttattaatttttattttttgttttttatttta
ctaatTAACCTTTCACTATCACAAAAAACGCCATCacaaactacacgttt
ttttttttaagaaacacacttttaagaaacatgacgctcagaatgcctaa
aaactaagaaacatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTCGTTCACAACTTTCCTGAAAAATCTTTGTGTCATTACCTATTTCCC
TATCCTCATGTATAGCAAcgacagattttggaaaaattggagacataaat
ttttcgcaaaaataagcatatgataAACATACTTCGAGCCTGAGTCTAAA
ATATCTCTGATCATAACTGAGCTTGTTTcctaaaaaaaacataatatgct
tataaaaaaacatttacatcTTTTTGATGACTTTGTCAGGTATTtattaa
aatagtaaaaaaagtaattaaattaCTCACTGGCATCACTCAGTGATTTT
TGTACTCAAATAATTGAATATTATCAAAGGCATTGAACTTATCGATAGAA
ATCTTAAGGACTTATATGTGATTTATCTGTACAAAATAATTCAACTCACa
ttgaaattcttttatttCGTTTTGCAGAAACAACTTCTCAGTGCTGCTAA
GAAAGCAATTTCTAAGCTAAAGACAAGAGGATATCAAGAAAGCCCAAAAG
AGGTAATTTTTACTAGACCCACACATACTGATATATAGTTTTGATTCAAA
TGTAACAATACTGTTTTCGTAAATTAAGATTTTCAactaataaaattttc
aatgtcTTTAATTAAAGGTCTTATCTTTCTTCGACCTTCTTGGAACTCTA
AACTTACGCAATTTTTTTGCAGGATTTTACTTTTCCTGGTAAAGTTCATT
AGTTAGATTACTAtatatgttaattttttttatgtcaTTAGGATTTAGAA
GAATCATGTGCAGTCTGTTTAGAATGTTACAAAGAGGGGGAAACACTGCG
CATTTTACCATGCAAACACGAGTTTCATAAAGCTTGTATCGACCCGTGGC
TGCTGAACCATCGTACATGCCCGATGTGCAAAAGCAACATCTTGAAATCT
CTTGGAGTGGTAAGACctgttcattttttttaaatcacgaCATCACGGCT
TCCCAAGAATAATAAATACGTTTCTAAATACTTGTAACAATTTatgttgt
tttgatgtttttattttgaatcaaTGCCAGccttatttttttgcaaatat
tgtCGTCGAAGCACTTTAAATGTGTCTTCCGCTAGGAAAGTCCCTCTTct
atatttgtttttgttttggtttgtaaTGTAAGCTGATACCGTACCTCTAT
AGTGATATGTCACTTGATAAAGTGTAATTAGGTGCCAAACGTTTTCGAAG
ATGCGTGGAAATCGGCATTATACTGATTTTTTTCCTGTTTCCTTTCTACT
GCTTAGGCTTTCATTGGGCCAAAAAGAGGATCTTCTAAAATACATTCGTA
GATCACTCTTTTGAAGCGCTATCTTTCGTTTTTCAACCAGTTTCAACCCT
ATATGACTGAATATATTTTTGAGCAACCAATAATCAGACCGTTTAACGTC
ATATTTTGTTTTTGTTCTTTTCAGGAGATGCCTGAGAACGAGACGAACGG
TTCTGACGATAGATATGTTCGTGGGTTCGTGCCACCATCCACGACTACTA
TAGAAGCCAGCCAATCCAACAATGGGGAGCCTTCAGTTGTTGTAGTGGTG
CACGAGCAACAACAAGTCCCTCAAGCATGGGCTGAACCCTCCATTGCGCA
ACCCAGCCCTGACAATCGATATTCAGGTACTTTCTTTTGTTGTTTACTCA
TTGATTTGAACATGTAGGCCTTGTCTGTTTAAACGGGGTTTGGGACTGTG
ATTACTTGATAGCTTTTTGTTTTCATTTGAAAGATAAATGTTATACAGTA
TTTTGCATTATTGTGGTCTCTTATTTTATTCCAAGATTGAAACCTAATAT
TTTTCAAAACACAGTTGAGGCTGGTTGAGATACTGTGTATCAACTGCAAG
ATATGAGAAACGAGATTCTTTGAAAATATCAAAAAAGACGGCAGAGGTAA
TAAAAAGAAGAGCTTTTTCTAATGAAACCTCTCTCGTTTTCTCTCCTTAG
CTTCGTCGAGTTCAAGCGATACCGATTCTGATCGATCAACAGTCGCCCTC
GTTTCTTTTGAACAACGGGTTTGAATAAATTTATGGTGCTGGCACAGTTT
TTTTGTATTCTACTTAGAAAATTTCTCATAGCGTGgtgaatgtttttaat
tttttttctaaccaACCTAATATGAGAGAGTACTTTGTACCACACAAAAG
CGTTGATCGCTTGTTTCAGTTTTATCCTGTTGTGTTGGTGGGGCCATTTC
CTTTGGCTTCAAAACTTTGATATGTATTGACTTTGAATGACGTAGAAGAG
CCAATTTCTTAATCGCCTCTTCTCATTAGACACTAATCGAATTCCGGTTG
TTTGAAATCACGAATTTCCGGGTCTGCCACCACACGGTGAAATATTCATC
TGTGATAGTTGTTACTAAATGTGGATGGCGTTCTTTCNGGTCTGCCACCA
CACGGTGAAATATTCATCTGTGATAGTTGTTACTAAATGTGGATGGCGTT
CTTTCGCAACCAATACATTATGACATTTTACTCGATCATTCTTGACTCTG
ATGTAATTATAAACAATGATCTGGTAAAACGATTTAGGAATTCCTATTTC
TTTTGTTCGTTTTCGAACTGAAGAAAATTCGAAGAGTATTTCTTTTTTGA
GAGTTGGCAAGGAGCTTTATGGACTGATGACAGGCTAAAGTTCGTACATA
GTGTATGTGATTGAAAAGTATGGCAAACAGGTTTTGGCATAATCATGGTC
GGGAAAACGAAGCTCGCTGTCAACTTAATAAAAACGACCTTTCTTTTGTG
ATGTTGAAATGTTTAAAAGGTATTGCCAAAACTCGATTCGTTTTGCCTTN
GAAGCTCGCTGTCAACTTAATAAAAACGACCTTTCTTTTGTGATGTTGAA
ATGTTTAAAAGGTATTGCCAAAACTCGATTCGTTTTGCCTTGCTATGAAA
CGAGTTGCAAAATTGGTAGAATATCATcgaaatttcatttgtttatacTG
ATGTTTGTCTCATTTGTTTGTCTTACAAATCCAACCTTAAAAGGAGTTAA
ATTAAAGAAATGTCTTTTTAGTAACAGCAATGTTTTACGCATATTTTAAT
CCGgtaattttttgatattttaccgAGAGGTTTAGACAGAAGCTTATCGA
ATTATGACTTTTTTGCGTACTTggtataaaaactttttaagatgAAAGTT
ACCTATAAATTATTCAGTAACTTTTAACCCATTGAGAACATCCAGGTTTT
TTAAGTAAGTTAAAGTTCTTTCAGAGGGATAATCATTTCTAGATAAAACT
TTAGCGAGTCCGTGCTGGAAAAATCATGCCTTTAGAACGAActagtttgt
ttatatttatattttttgtcttATTGTTTTTATCGTTTAGTTCTAAACGG
TCTACATCAATCCTTAACCATAATCGCTATTTTACGCGATTTTTTCCAGA
AACTTGTATTTTACTATACGTTCAACGGACGTTAACGTAATTAACGAAAC
GATCCTTCTTTTCGACGATTCCTGTCcaatcaaaattaaaacataATACA
CTTGATTGACTTGACGCCCCCGCACCAGTGTTTTTTGTTGTATTGGACCT
TATCCATcctccccaaattttccaagaCCGCCTTTTCCCACGTTTATAGG
TCACCTTAAAGTATACTAGATATAGAACCATTCTTGCTCCCACTACAAAT
AGCGTCCAAAAAATATACCCGGGATTTTTTGCGTAATAAATTTGGTCGTC
AATAATACTCCGATAATATAAGGtatattaattaattttttttctttttt
gtaaatattaacgttgaattgttttaaaaattttcgacTAGATTTTTTGT
CAGATAAAAGAAAGGTCGATAAAATCTCACACTTTTGTGTTTACaacttc
aaatttttgcttcatccgttttaccaccctaaactcgatccaatattttt
tttacacatttttctattgtctttaggtgcagaaaaaagactgggatggt
tttaggttggtaaaacggacaaaaaaatgcccgcgcggctacggtcgaaa
aggtgtataaaacACAAAAACTTTAATGTGTAGATGCGTG

Coding sequence (CDS) from alignment at scaffold_15:418774..425813+

>TCONS_00048998 ID=TCONS_00048998|Name=TCONS_00048998|organism=Clytia hemisphaerica|type=CDS|length=6000bp|location=Sequence derived from alignment at scaffold_15:418774..425813+ (Clytia hemisphaerica)
ATGTTGCAGGTTCTGCTAATAAGACTTACTACACTATGTATATTGATGTC
ACTATGTATAGCAAGTTCATACGAGGAAAAAACTGTTTACACACAAGCCT
TGCTGACTGTTTCCTATTTTAAAGGAGGTAAAAAGCCTGACCCTACCAAG
GTTGCTGGTAAATATGCTAAAAGATCAGGCAAACAACAAGTTGAAGGTGT
TTTATACTTTTCAAACACTATAAACTGGTGCGAtgaaaagtcagcaaaaa
agtataaatttccaaaagaaaaatggaTTGCCTTGATTCCAAGACAACAG
ACAGAACCAAACAAAACATGTACACTTTCCCTTAAATTATTGACTGCAAA
AAAGATGAACGCTTCAGGTGTTGTAGTATATAATAGCATTCCAGGTGAGG
TGCCAGCTATTGAAGATGACACGCGTGATGTTATAACAGTTATGATTGAC
AGGGAAGCTGGTAATGAATTAAGGAAACTTGTTTTAGATAGTTCTATTAC
AGACATTAAATGTAAAGTAACAGTAGGTACTCATTACGTCGATCGCAGAT
GGAAAGTTAGCAGGACATCTGTCTTATTTGTTTTGGTATCATTCATCTTG
CTCATGTGCATATCACTTGCCTGGCTGGTATTTTACTATGTTCAACGATT
TAGACATATCTACAGAAATGATAGAAAAGAGAAACAACTTCTCAGTGCTG
CTAAGAAAGCAATTTCTAAGCTAAAGACAAGAGGATATCAAGAAAGCCCA
AAAGAGGATTTAGAAGAATCATGTGCAGTCTGTTTAGAATGTTACAAAGA
GGGGGAAACACTGCGCATTTTACCATGCAAACACGAGTTTCATAAAGCTT
GTATCGACCCGTGGCTGCTGAACCATCGTACATGCCCGATGTGCAAAAGC
AACATCTTGAAATCTCTTGGAGTGGAGATGCCTGAGAACGAGACGAACGG
TTCTGACGATAGATATGTTCGTGGGTTCGTGCCACCATCCACGACTACTA
TAGAAGCCAGCCAATCCAACAATGGGGAGCCTTCAGTTGTTGTAGTGGTG
CACGAGCAACAACAAGTCCCTCAAGCATGGGCTGAACCCTCCATTGCGCA
ACCCAGCCCTGACAATCGATATTCAGCTTCGTCGAGTTCAAGCGATACCG
ATTCTGATCGATCAACAGTCGCCCTCGTTTCTTTTGAACAACGGGTTTGA
ATGTTGCAGGTTCTGCTAATAAGACTTACTACACTATGTATATTGATGTC
ACTATGTATAGCAAGTTCATACGAGGAAAAAACTGTTTACACACAAGCCT
TGCTGACTGTTTCCTATTTTAAAGGAGGTAAAAAGCCTGACCCTACCAAG
GTTGCTGGTAAATATGCTAAAAGATCAGGCAAACAACAAGTTGAAGGTGT
TTTATACTTTTCAAACACTATAAACTGGTGCGAtgaaaagtcagcaaaaa
agtataaatttccaaaagaaaaatggaTTGCCTTGATTCCAAGACAACAG
ACAGAACCAAACAAAACATGTACACTTTCCCTTAAATTATTGACTGCAAA
AAAGATGAACGCTTCAGGTGTTGTAGTATATAATAGCATTCCAGGTGAGG
TGCCAGCTATTGAAGATGACACGCGTGATGTTATAACAGTTATGATTGAC
AGGGAAGCTGGTAATGAATTAAGGAAACTTGTTTTAGATAGTTCTATTAC
AGACATTAAATGTAAAGTAACAGTAGGTACTCATTACGTCGATCGCAGAT
GGAAAGTTAGCAGGACATCTGTCTTATTTGTTTTGGTATCATTCATCTTG
CTCATGTGCATATCACTTGCCTGGCTGGTATTTTACTATGTTCAACGATT
TAGACATATCTACAGAAATGATAGAAAAGAGAAACAACTTCTCAGTGCTG
CTAAGAAAGCAATTTCTAAGCTAAAGACAAGAGGATATCAAGAAAGCCCA
AAAGAGGATTTAGAAGAATCATGTGCAGTCTGTTTAGAATGTTACAAAGA
GGGGGAAACACTGCGCATTTTACCATGCAAACACGAGTTTCATAAAGCTT
GTATCGACCCGTGGCTGCTGAACCATCGTACATGCCCGATGTGCAAAAGC
AACATCTTGAAATCTCTTGGAGTGGAGATGCCTGAGAACGAGACGAACGG
TTCTGACGATAGATATGTTCGTGGGTTCGTGCCACCATCCACGACTACTA
TAGAAGCCAGCCAATCCAACAATGGGGAGCCTTCAGTTGTTGTAGTGGTG
CACGAGCAACAACAAGTCCCTCAAGCATGGGCTGAACCCTCCATTGCGCA
ACCCAGCCCTGACAATCGATATTCAGCTTCGTCGAGTTCAAGCGATACCG
ATTCTGATCGATCAACAGTCGCCCTCGTTTCTTTTGAACAACGGGTTTGA
ATGTTGCAGGTTCTGCTAATAAGACTTACTACACTATGTATATTGATGTC
ACTATGTATAGCAAGTTCATACGAGGAAAAAACTGTTTACACACAAGCCT
TGCTGACTGTTTCCTATTTTAAAGGAGGTAAAAAGCCTGACCCTACCAAG
GTTGCTGGTAAATATGCTAAAAGATCAGGCAAACAACAAGTTGAAGGTGT
TTTATACTTTTCAAACACTATAAACTGGTGCGAtgaaaagtcagcaaaaa
agtataaatttccaaaagaaaaatggaTTGCCTTGATTCCAAGACAACAG
ACAGAACCAAACAAAACATGTACACTTTCCCTTAAATTATTGACTGCAAA
AAAGATGAACGCTTCAGGTGTTGTAGTATATAATAGCATTCCAGGTGAGG
TGCCAGCTATTGAAGATGACACGCGTGATGTTATAACAGTTATGATTGAC
AGGGAAGCTGGTAATGAATTAAGGAAACTTGTTTTAGATAGTTCTATTAC
AGACATTAAATGTAAAGTAACAGTAGGTACTCATTACGTCGATCGCAGAT
GGAAAGTTAGCAGGACATCTGTCTTATTTGTTTTGGTATCATTCATCTTG
CTCATGTGCATATCACTTGCCTGGCTGGTATTTTACTATGTTCAACGATT
TAGACATATCTACAGAAATGATAGAAAAGAGAAACAACTTCTCAGTGCTG
CTAAGAAAGCAATTTCTAAGCTAAAGACAAGAGGATATCAAGAAAGCCCA
AAAGAGGATTTAGAAGAATCATGTGCAGTCTGTTTAGAATGTTACAAAGA
GGGGGAAACACTGCGCATTTTACCATGCAAACACGAGTTTCATAAAGCTT
GTATCGACCCGTGGCTGCTGAACCATCGTACATGCCCGATGTGCAAAAGC
AACATCTTGAAATCTCTTGGAGTGGAGATGCCTGAGAACGAGACGAACGG
TTCTGACGATAGATATGTTCGTGGGTTCGTGCCACCATCCACGACTACTA
TAGAAGCCAGCCAATCCAACAATGGGGAGCCTTCAGTTGTTGTAGTGGTG
CACGAGCAACAACAAGTCCCTCAAGCATGGGCTGAACCCTCCATTGCGCA
ACCCAGCCCTGACAATCGATATTCAGCTTCGTCGAGTTCAAGCGATACCG
ATTCTGATCGATCAACAGTCGCCCTCGTTTCTTTTGAACAACGGGTTTGA
ATGTTGCAGGTTCTGCTAATAAGACTTACTACACTATGTATATTGATGTC
ACTATGTATAGCAAGTTCATACGAGGAAAAAACTGTTTACACACAAGCCT
TGCTGACTGTTTCCTATTTTAAAGGAGGTAAAAAGCCTGACCCTACCAAG
GTTGCTGGTAAATATGCTAAAAGATCAGGCAAACAACAAGTTGAAGGTGT
TTTATACTTTTCAAACACTATAAACTGGTGCGAtgaaaagtcagcaaaaa
agtataaatttccaaaagaaaaatggaTTGCCTTGATTCCAAGACAACAG
ACAGAACCAAACAAAACATGTACACTTTCCCTTAAATTATTGACTGCAAA
AAAGATGAACGCTTCAGGTGTTGTAGTATATAATAGCATTCCAGGTGAGG
TGCCAGCTATTGAAGATGACACGCGTGATGTTATAACAGTTATGATTGAC
AGGGAAGCTGGTAATGAATTAAGGAAACTTGTTTTAGATAGTTCTATTAC
AGACATTAAATGTAAAGTAACAGTAGGTACTCATTACGTCGATCGCAGAT
GGAAAGTTAGCAGGACATCTGTCTTATTTGTTTTGGTATCATTCATCTTG
CTCATGTGCATATCACTTGCCTGGCTGGTATTTTACTATGTTCAACGATT
TAGACATATCTACAGAAATGATAGAAAAGAGAAACAACTTCTCAGTGCTG
CTAAGAAAGCAATTTCTAAGCTAAAGACAAGAGGATATCAAGAAAGCCCA
AAAGAGGATTTAGAAGAATCATGTGCAGTCTGTTTAGAATGTTACAAAGA
GGGGGAAACACTGCGCATTTTACCATGCAAACACGAGTTTCATAAAGCTT
GTATCGACCCGTGGCTGCTGAACCATCGTACATGCCCGATGTGCAAAAGC
AACATCTTGAAATCTCTTGGAGTGGAGATGCCTGAGAACGAGACGAACGG
TTCTGACGATAGATATGTTCGTGGGTTCGTGCCACCATCCACGACTACTA
TAGAAGCCAGCCAATCCAACAATGGGGAGCCTTCAGTTGTTGTAGTGGTG
CACGAGCAACAACAAGTCCCTCAAGCATGGGCTGAACCCTCCATTGCGCA
ACCCAGCCCTGACAATCGATATTCAGCTTCGTCGAGTTCAAGCGATACCG
ATTCTGATCGATCAACAGTCGCCCTCGTTTCTTTTGAACAACGGGTTTGA
ATGTTGCAGGTTCTGCTAATAAGACTTACTACACTATGTATATTGATGTC
ACTATGTATAGCAAGTTCATACGAGGAAAAAACTGTTTACACACAAGCCT
TGCTGACTGTTTCCTATTTTAAAGGAGGTAAAAAGCCTGACCCTACCAAG
GTTGCTGGTAAATATGCTAAAAGATCAGGCAAACAACAAGTTGAAGGTGT
TTTATACTTTTCAAACACTATAAACTGGTGCGAtgaaaagtcagcaaaaa
agtataaatttccaaaagaaaaatggaTTGCCTTGATTCCAAGACAACAG
ACAGAACCAAACAAAACATGTACACTTTCCCTTAAATTATTGACTGCAAA
AAAGATGAACGCTTCAGGTGTTGTAGTATATAATAGCATTCCAGGTGAGG
TGCCAGCTATTGAAGATGACACGCGTGATGTTATAACAGTTATGATTGAC
AGGGAAGCTGGTAATGAATTAAGGAAACTTGTTTTAGATAGTTCTATTAC
AGACATTAAATGTAAAGTAACAGTAGGTACTCATTACGTCGATCGCAGAT
GGAAAGTTAGCAGGACATCTGTCTTATTTGTTTTGGTATCATTCATCTTG
CTCATGTGCATATCACTTGCCTGGCTGGTATTTTACTATGTTCAACGATT
TAGACATATCTACAGAAATGATAGAAAAGAGAAACAACTTCTCAGTGCTG
CTAAGAAAGCAATTTCTAAGCTAAAGACAAGAGGATATCAAGAAAGCCCA
AAAGAGGATTTAGAAGAATCATGTGCAGTCTGTTTAGAATGTTACAAAGA
GGGGGAAACACTGCGCATTTTACCATGCAAACACGAGTTTCATAAAGCTT
GTATCGACCCGTGGCTGCTGAACCATCGTACATGCCCGATGTGCAAAAGC
AACATCTTGAAATCTCTTGGAGTGGAGATGCCTGAGAACGAGACGAACGG
TTCTGACGATAGATATGTTCGTGGGTTCGTGCCACCATCCACGACTACTA
TAGAAGCCAGCCAATCCAACAATGGGGAGCCTTCAGTTGTTGTAGTGGTG
CACGAGCAACAACAAGTCCCTCAAGCATGGGCTGAACCCTCCATTGCGCA
ACCCAGCCCTGACAATCGATATTCAGCTTCGTCGAGTTCAAGCGATACCG
ATTCTGATCGATCAACAGTCGCCCTCGTTTCTTTTGAACAACGGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031122XLOC_031122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048998-exon-scaffold_15-1491911889:418774..419708TCONS_00048998-exon-scaffold_15-1491911889:418774..419708Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1510915933:418774..419708TCONS_00048998-exon-scaffold_15-1510915933:418774..419708Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1575043694:418774..419708TCONS_00048998-exon-scaffold_15-1575043694:418774..419708Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1491911889:422201..422275TCONS_00048998-exon-scaffold_15-1491911889:422201..422275Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1510915933:422201..422275TCONS_00048998-exon-scaffold_15-1510915933:422201..422275Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1575043694:422201..422275TCONS_00048998-exon-scaffold_15-1575043694:422201..422275Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1491911889:422515..422682TCONS_00048998-exon-scaffold_15-1491911889:422515..422682Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1510915933:422515..422682TCONS_00048998-exon-scaffold_15-1510915933:422515..422682Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1575043694:422515..422682TCONS_00048998-exon-scaffold_15-1575043694:422515..422682Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1491911889:423198..423399TCONS_00048998-exon-scaffold_15-1491911889:423198..423399Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1510915933:423198..423399TCONS_00048998-exon-scaffold_15-1510915933:423198..423399Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1575043694:423198..423399TCONS_00048998-exon-scaffold_15-1575043694:423198..423399Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1491911889:423724..425813TCONS_00048998-exon-scaffold_15-1491911889:423724..425813Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1510915933:423724..425813TCONS_00048998-exon-scaffold_15-1510915933:423724..425813Clytia hemisphaericaexon
TCONS_00048998-exon-scaffold_15-1575043694:423724..425813TCONS_00048998-exon-scaffold_15-1575043694:423724..425813Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048998-proteinTCONS_00048998-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:418774..425813 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.3762	18.2583	19.2287	17.7156	59.0527	40.195	59.7673	63.0245	44.0424	47.513	39.9779	33.9385	31.0405	28.3811	22.5794	29.2962	33.7466	36.0206	25.871	32.8448	50.6692	50.5786	32.5949	37.0276	31.4212	36.247	52.3317	48.3193	37.0228	41.1898
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
[Close]
BLAST of TCONS_00048998 vs. Swiss-Prot (Human)
Match: RN150 (RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.574e-45
Identity = 127/323 (39.32%), Postives = 182/323 (56.35%), Query Frame = 3 
Query:  279 LTTLCILMSLCIASSYEEKTVYTQALLTVSYFKGGKKPDPTKVA---------------GKYAKRSGKQQVEGVLYFSNTIN---WCDEKSAKKYKFPKEKWIALIPRQQTEPNKTCTLSLKLLTAKKMNASGVVVYNSIPGEVPAI---EDDTRDVITVMIDREAGNELRKLVLDSSITDIKCKVTVGTHYVDRRWKVSRTXXXXXXXXXXXXMCISLAWLVFYYVQRFRHIYRNDRKEXXXXXXXXXXXXXXXTRGYQESPKEDLEE--SCAVCLECYKEGETLRILPCKHEFHKACIDPWLLNHRTCPMCKSNILKSLGV 1178
            L + C +  LC+  +  EK  +  A + ++Y +    PDP   A               G+Y + S KQ   G +  +++ +    CD  +        + WIALIP+        CT   K+  A   NAS VV++N        I        D++ +MI    G E+  L L+ +IT +   +T+GT  + +   VSRTSV+FV +SFI+LM ISLAWLVFYY+QRFR+    DR +++L  AAKKAISKL+ R  ++  KE   +  +CAVC+E YK  + +RILPC+H FHK+C+DPWLL+HRTCPMCK NILK+LG+
Sbjct:   18 LLSFCFVHLLCLDFTVAEKEEWYTAFVNITYAEPA--PDPGAGAAGGGGAELHTEKTECGRYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPTRGKNWIALIPKGN------CTYRDKIRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSL-LERNIT-VTMYITIGTRNLQKY--VSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGI 328
The following BLAST results are available for this feature:
BLAST of TCONS_00048998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1502.574e-4539.32RING finger protein 150 OS=Homo sapiens GN=RNF150 ... [more]
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