TCONS_00049595-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049595-protein
Unique Name	TCONS_00049595-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1125

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049595-protein ID=TCONS_00049595-protein|Name=TCONS_00049595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1125bp
MASYTAGQFANYNSLTDKNLSGYFANTQMRKHLVRSGLITKNGKITSENS
YRLKIAKREHREHVKDLLATAIVEKALDMERMRQYEIRKKLDELYKIELV
NKVRSERGGKSKEELYALLSPRSGGTRKKSRRSVKSAAITSSEREMTKLP
EINFDERTRLLKYETTSVDSGSDSASRYTAPRPPKQPSAGRSVSAHTYGS
KAPHPPPPKSKKKKKRKIHRGLMLAKSEQMVAHRVQVQSMAEVTMKFLGS
NLQLASDMFPANKLSEIQVIQQHCGASTVCVFREMIPPNTVFTFVSRRHR
GSPFGLTINIDGIKNIRISSCCEYKHKPGYRLGGKNSQFGLISVQGAAPC
YRCQVRLNLLDKNNNEAEKEASSDEEAATRSFDIIVSRGGKRQEAVRERP
ISANVTTQTEASLLLPNSQEDDESPKEKDAVALTEQYQDDFDDDFEADEN
DSKNGDDDLNENVSSSSESDSSDNESDKDSDTESSDTESDSEKYKSENSG
EKQMDNSLTETDDTITSTNQQRDEEDEHQPSDVDARSDADSDTDVAKKSD
TYDDHDDHDDDKEHVNVEQEDSKKRDSDSESDKESVKSDGDGRRSSVSSE
SDSSDDNEKDKNLKDNEEEVEEGKDDVKDNEEQHNAKLADDLIEKIEHMN
IEDEPEHQPKEEKQDHNDDEESNQLEGKEEEDVENEDGAGEYEEEMAPSI
PSVVSRESTMLTGNEDGRFESENKTIQFNEEVDVVHYEKVEVESSANDGH
GDSSDDGSDADDDDDFDSALNNGRERVILADLGLDDDDLEVESDDIIIDS
DGDIKEVPKNKEEEDFSLEEGEKSDDNDHRIFDKGLDPSNTTIDQNNNNV
TTYPRDQSEEPIKSLIGDVPSHVDLVNLKLSSEQTEELALLLEERKDDIE
NLSLRNVELEGGLERIKHFVMTMNNLKVLNLNDSDINIQQAPHLTDILST
CKSTLTTVALNGNPLGNDGITSVLDAVTDSVTLTSLDIGRCEIADTGAEQ
IGELLRKNQSVVELTMGWNTITKEGWIHISNALKCNTSLKTLSIDACQIA
DEELNIICQGIADNKSLQGVDMEANIFTDKGVEALIQAIEKCETLLDVTI
EPCENVSHEMQEQVREVLEKRVEGL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031446	XLOC_031446	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049595	TCONS_00049595	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt
IPR027962	DUF4590

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 882..902
None	No IPR available	COILS	Coil	Coil	coord: 357..377
None	No IPR available	COILS	Coil	Coil	coord: 613..633
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 952..979 e-value: 11.0 score: 9.8 coord: 1008..1035 e-value: 15.0 score: 8.8 coord: 980..1007 e-value: 5.0 score: 12.2 coord: 1036..1063 e-value: 16.0 score: 8.6 coord: 1064..1091 e-value: 23.0 score: 7.5
None	No IPR available	GENE3D	3.40.50.2000		coord: 1015..1121 e-value: 5.3E-17 score: 61.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 388..430
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 443..857
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..142
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 872..1121
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 872..1014 e-value: 1.0E-14 score: 53.6
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 982..1001 e-value: 0.01 score: 15.7 coord: 952..972 e-value: 0.72 score: 10.0
IPR027962	Protein of unknown function DUF4590	PFAM	PF15257	DUF4590	coord: 264..365 e-value: 3.2E-41 score: 139.7

Blast

[Close]

BLAST of TCONS_00049595-protein vs. Swiss-Prot (Human)
Match: ERIC3 (Glutamate-rich protein 3 OS=Homo sapiens GN=ERICH3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.056e-33
Identity = 105/362 (29.01%), Postives = 182/362 (50.28%), Query Frame = 0

Query:  233 HRVQVQSMAEVTMKFLGSNLQLASDMFPANKLSEIQVIQQHCGASTVCVFREMIPPNTVFTFVSRRHRGSPFGLTINIDGIKNIRISSCCEYKHKPGYRLGGKNSQFGLISVQGAAPCYRCQVRLNLLDKNN-NEAEKEASSDEEAATRSFDIIVSRGGKRQEAVRER--------PISANVTTQ-TEASLLLPNSQEDDESPKEKDAVALTEQYQD-----DFDDDFEADE-------NDSKNGDDDLNENVSSSSESDSSDN-ESDKDSDTESSDTESDSEKYKSENSGEKQMDNSLTETDDTITSTNQQR------DEEDEHQPSDVDARSDADSDTDVAKKSDTYDDHDDHDDDKEHV 565
            H+  + S A +TM +LG N+ L+SD    +   EI+V QQHCG   +CV++  +     F F+S+RH G PF LT  ++G++  R+SSCCEYKH+ G RLGGK   FG + V+ ++PCY+C + + L  K +  ++ KE S+++    +  +  V +  +R+  + +R         +SA  + Q  +  L    +  ++ + K K    + E  Q+     ++++DFE DE       N+    D  +N  +  S   D  DN + +K+S+T S       +  K EN G  + +    + D    S+   R      D EDE    D +A +D+ +D + A++S + +  ++    K H+
Sbjct:  279 HKTSLHSNAAITMIYLGKNVHLSSDN--PDFRDEIKVYQQHCGGENLCVYKGKLLEKETFQFISKRHHGFPFSLTFFLNGMQVNRLSSCCEYKHRKGSRLGGKRGYFGFVCVERSSPCYKCIIAMGLDKKPSLPKSRKEKSTEKGEELKKAEGKVRK--EREYVIPKRNEIKENKTSVSAKFSAQEIKTGLKEVVTAVEEMTSKGKPGQEVLEDDQENTLKYEYEEDFEVDEEKQGEKSNEEGQADVQMN-GIPQSPLDDKKDNLDPEKESETSSQKAPDARDNVKDENDGCSESELEEDKQDMKTASSTSSRSHPYSSDSEDESAVGDREAHTDSSTD-ESARRSSSQELSENDKPRKSHL 634

HSP 2 Score: 127.487 bits (319), Expect = 1.813e-29
Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    3 SYTAGQFANYNSLTDKNLSGYFANTQMRKHLVRSGLITKNGKITSENSYRLKIAKREHREHVKDLLATAIVEKALDMERMRQYEIRKKLDELYKIELVNKVRSERGGKSKEELYALLSP 121
            S+ AG  A YNSL DK+L+GYF NT++R+HL+RSGLIT++G+I SE  Y+L + KR+H++++++ LA AI  K LDMER  Q EI+KKL+ L + E + + + E   +S E    +LSP
Sbjct:    4 SHPAGLLAAYNSLMDKHLAGYFNNTRIRRHLLRSGLITRSGRILSEKEYKLNMMKRDHQKYIRECLAQAIFHKVLDMERYHQLEIKKKLETLARKERIQRFKGEHTRRSVENNMPILSP 122

The following BLAST results are available for this feature:

BLAST of TCONS_00049595-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049595-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ERIC3	1.056e-33	29.01	Glutamate-rich protein 3 OS=Homo sapiens GN=ERICH3...	[more]

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TCONS_00049595-protein (polypeptide) - C. hemisphaerica