TCONS_00049690-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049690-protein
Unique NameTCONS_00049690-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049690-protein ID=TCONS_00049690-protein|Name=TCONS_00049690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MADFHVLKISFWSTSSENEIDSVSPHCIFYKKHVGEGPTLFLMNIPPYCD
KICLKSLFKDCGTIKSINIVSTPRLKSESEAPIPLLKMMETVEKDFQYAY
VTFNEESSVDVALDMRKSKIIRNIKVDDSLVGLNRWIKDYGELYPEESSV
QSIVNEYMVQYDLNKAKEEEARKEEGQPDDEGWVTVPVKKKPNQDAQNAK
KKLNKKLEKKKRSEKELMSFYLFQQREEKREKVAALRLKFEDDKKRITQL
RQQRKFKPF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031507XLOC_031507Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049690TCONS_00049690Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR024326RRP7
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..216
NoneNo IPR availableCOILSCoilCoilcoord: 226..253
NoneNo IPR availableGENE3D3.30.70.330coord: 31..257
e-value: 3.0E-10
score: 39.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..212
NoneNo IPR availableCDDcd12951RRP7_Rrp7Acoord: 132..259
e-value: 1.66832E-38
score: 131.632
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 39..127
e-value: 6.1E-6
score: 35.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 38..131
score: 9.354
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 36..125
IPR024326Ribosomal RNA-processing protein 7PFAMPF12923RRP7coord: 132..259
e-value: 3.3E-33
score: 114.5

Blast
[Close]
BLAST of TCONS_00049690-protein vs. Swiss-Prot (Human)
Match: RRP7A (Ribosomal RNA-processing protein 7 homolog A OS=Homo sapiens GN=RRP7A PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.192e-33
Identity = 85/232 (36.64%), Postives = 130/232 (56.03%), Query Frame = 0 
Query:   39 TLFLMNIPPYCDKICLKSLFKDCGTIKSINIVSTPRLKS---ESEA------PIPLLKMMETVEKDFQYAYVTFNEESSVDVALDMRKSKIIRNIKVDDSLVGLNRWIKDYGELYPEESSVQSIVNEYMVQYDLN-KAKEEEARKEEGQPDDEGWVTVPVK-KKPNQDAQNAKKKLNKKLEKKKRSEKELMSFYLFQQREEKREKVAALRLKFEDDKKRITQLRQQRKFKPF 259
            TLF++N+PPYC +  L  L   CG ++S+ +   P L     ES +      P+P           FQ AYV F + S V  AL + K  ++ + +      G+++WI DY +  P+  +++  V+ +M  YD     +E +A++EEG PD+EGWV V  + ++P      A      + E++KRS KEL++FY +Q RE K E +A LR KFE+DK+RI  LR QRKF+P+
Sbjct:   60 TLFVLNVPPYCTEESLSRLLSTCGLVQSVELQEKPDLAESPKESRSKFFHPKPVP----------GFQVAYVVFQKPSGVSAALAL-KGPLLVSTESHPVKSGIHKWISDYADSVPDPEALRVEVDTFMEAYDQKIAEEEAKAKEEEGVPDEEGWVKVTRRGRRPVLPRTEAASLRVLERERRKRSRKELLNFYAWQHRESKMEHLAQLRKKFEEDKQRIELLRAQRKFRPY 280
The following BLAST results are available for this feature:
BLAST of TCONS_00049690-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP7A9.192e-3336.64Ribosomal RNA-processing protein 7 homolog A OS=Ho... [more]
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