TCONS_00049752-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049752-protein
Unique NameTCONS_00049752-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049752-protein ID=TCONS_00049752-protein|Name=TCONS_00049752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MEKMATEMESSNEIAVIDKVKEILGDSAKFKPITVSKEVDPVSDVGNLLL
SDLQPVDTKQFKSNKEIFLKNLARDNAQLLFNQIWELPIERVDSVVVAQL
PETNTFLPREKPVPKPKPLTKWEEYAKKKGIENKKRSRMVWDKELDQWKP
RYGYKKANDDQAQWCMEVPVNKDPNEDQFQKAKDVKKERVAKNEYQRLRN
ISKAQKAAGNKSAPLSSKLKPEVKKDKERLTKEIDVAKVSTASMGKFQEK
LPNEKPNKKTGKKRKFETVCGDMNDEKRRALDIFNKINKPNTLDMNKAIN
KKMAQDQQLNAMDKKNKKKGGSMKIKNRKYKGGKQASVDKMKAKTLGKKK
RR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031549XLOC_031549Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049752TCONS_00049752Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007023Ribosom_reg
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007023Ribosomal biogenesis regulatory proteinPFAMPF04939RRS1coord: 43..201
e-value: 6.4E-57
score: 191.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..227

Blast
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BLAST of TCONS_00049752-protein vs. Swiss-Prot (Human)
Match: RRS1 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 2.467e-89
Identity = 147/315 (46.67%), Postives = 206/315 (65.40%), Query Frame = 0 
Query:   20 VKEILG-----DSAKFKPITVSKEVDPVSDVGNLLLSDLQP-VDTKQFKSNKEIFLKNLARDNAQLLFNQIWELPIERVDSVVVAQLPETNTFLPREKPVPKPKPLTKWEEYAKKKGIENKKRSRMVWDKELDQWKPRYGYKKANDDQAQWCMEVPVNKDPNEDQFQKAKDVKKERVAKNEYQRLRNISKAQKAAGNKSAPLSSKLKPEVKKDKERLTKEIDVAKVSTASMGKFQEKLPNEKPNKKTGKKRKFETVCGDMNDEKRRALDIFNKIN--KPNTLDMNKAINKKMAQDQQLNA-----MDKKNKKKGG 321
            V+E+L      ++ K + ITV KE++   D+GNLL SD  P    +      E  L+ LARDN QLL NQ+W+LP ERV+  +VA+LPE  T LPREKP+P+P+PLT+W+++A+ KGI  KK++ +VWD+   QW+ R+GY++A DD  +W +EVP N DP EDQF K    KKERVAKNE  RLRN+++A K       P ++ L P   + KE L + + VAKVSTAS+G+FQE+LP EK  + +GKKRKF+ + GD   EK+  L++   +N  KP  LD+ +A NK+M ++ Q  A     M +K K+KGG
Sbjct:    6 VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM----QLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQ-LDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGG 315
The following BLAST results are available for this feature:
BLAST of TCONS_00049752-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRS12.467e-8946.67Ribosome biogenesis regulatory protein homolog OS=... [more]
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