TCONS_00049786-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049786-protein
Unique NameTCONS_00049786-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049786-protein ID=TCONS_00049786-protein|Name=TCONS_00049786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MNETRIMKLFKSEDVDCQLLIQYSNGSVKMLNYLDGALNYGSLDELTLLH
SCDSVASREINGKRYVFGLTSHFRLFMNDKEIANNCTSFFIHDDFLLLTT
HAHSLRCVYIKSLVQNAETQLDNIAFDEASRRVERGSKLVTAVMQGTAVV
LQMPRGNLEYNHPRALVITHLQKLLNSLHYKQALEIMRKHRINLNLVYDN
DPQLFLKNVDTFVNNVNSSNRINLFLADL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031560XLOC_031560Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049786TCONS_00049786Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006849Iki3
Vocabulary: Cellular Component
TermDefinition
GO:0033588Elongator holoenzyme complex
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0002098 tRNA wobble uridine modification
cellular_component GO:0033588 Elongator holoenzyme complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006849Elongator complex subunit Iki3PFAMPF04762IKI3coord: 6..229
e-value: 1.3E-61
score: 208.7

Blast
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BLAST of TCONS_00049786-protein vs. Swiss-Prot (Human)
Match: ELP1 (Elongator complex protein 1 OS=Homo sapiens GN=IKBKAP PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.907e-49
Identity = 85/183 (46.45%), Postives = 122/183 (66.67%), Query Frame = 0 
Query:   50 HSCDSVASREINGKRYVFGLTSHFRLFMNDKEIANNCTSFFIHDDFLLLTTHAHSLRCVYIKSL---VQNAETQLDNIAFDEASRRVERGSKLVTAVMQGTAVVLQMPRGNLEYNHPRALVITHLQKLLNSLHYKQALEIMRKHRINLNLVYDNDPQLFLKNVDTFVNNVNSSNRINLFLADL 229
            + C       I  +  V GLT   R F+ND E+A+N TSF ++D+FLLLTTH+H+ +C  ++        A    ++++  E  R+VERGS++VT V Q T +VLQMPRGNLE  H RALV+  ++K L+ L +K+A E MRK RINLNL+YD++P++FL NV+TF+  ++S N INLF  +L
Sbjct:  605 YPCTQTELAMIGEEECVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTCQCFCLRDASFKTLQAGLSSNHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHINLFFTEL 787
The following BLAST results are available for this feature:
BLAST of TCONS_00049786-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELP11.907e-4946.45Elongator complex protein 1 OS=Homo sapiens GN=IKB... [more]
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