TCONS_00049807-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049807-protein
Unique Name	TCONS_00049807-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1030

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049807-protein ID=TCONS_00049807-protein|Name=TCONS_00049807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1030bp
MVIADGFISGHGSYLRCGWNVLDFMLVLTSIVDVFITLYFSGTKAQHIEI
IKGMRVLRATRALRPLRMIRKAPGLKLVVQTLLFSLKPIGNTVLIATIFF
IVFGILGVQQLKGKFYYCFGVTANLVRNKTECIQHPDGVWTNYQYNFDNL
LEALMTLFVVSTKDGWIDIMRRGIDARGVDLAPRTNYAQWRILYFVSFLL
IGGFLVLNMIVGVVVENFQKCQELQDIQSNKARNVLQKWKKKIEQRRNNY
WREYPPWRKRIYKLCTSASWDVAITSVICSNVVIMSLEHYQMSEEFHILL
EVCNIIFTTTYICEAVLLMVALSPRRYVKNKWYCFDLLVVIVSIISIFFD
YLNVHISNVNPAAIKAMRLLRVIRALKLLKMAKGLRFLLNHVAETIPQVT
NLALLFSLLFFVYSCLGIQLFGTLECTNRFPCAGLGRHANFKTLGNSMLT
LFRIATGDNWSGIMRDTLRSSCDNSIQCTSNCCVSRYVAPLFFVSFVLFA
QFVLVNIVIAVLMKHLRVTTNGKKKRKDLKKLSKKRDKQSSLDEESHKKR
LLKNLAKWKRNITKERSSKSSIKLKLLKDGNQTIELANKNSNKQETETLI
DGKRISQFIESCENRTTLPDRCRKCSHPAGTCGRSRKKLLRKYSCPEKFQ
SSHTDKCKLNPPPLFNISSKENMSLFKRRLLRKNSRQSNYEDGSLDEAIV
QINKYAYSSHNIPQLTISSKNEGLVMSSRTSILSNREHKSLRHTNSSRAT
VLSTKGKRRSLNRTASHETTSTTSKKVRENLRRTVSASSTETLREQMNSL
QPQTLFIMKDKVKDAKPKTFLLSPQATEIVETKDRKPRSLTLLQLPGTVD
TAANKRSRFAENNSSPFKGNLTPNMNQAKRTGNKDMVSTQQCLLSPTYNS
NEKHANAKRSIPTKSEILLSPSFNKIEKQKSDNLLSPSYSERLSPPKNEK
LLSPRLCKSPRNERHFVFEALPTIDKSATNVSKENDEIVLSSSCSKIEKL
KSDVSLSPPSIEKDNLDSAKDTDKIKELSK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031573	XLOC_031573	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049807	TCONS_00049807	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 229..249
None	No IPR available	GENE3D	1.10.287.70		coord: 266..520 e-value: 1.2E-45 score: 155.1 coord: 2..223 e-value: 2.4E-40 score: 137.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 737..779
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 929..954
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1004..1030
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 524..546
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 13..114 coord: 143..222
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 267..517
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 3..224 e-value: 1.5E-45 score: 155.2 coord: 268..516 e-value: 2.9E-45 score: 154.3

Blast

[Close]

BLAST of TCONS_00049807-protein vs. Swiss-Prot (Human)
Match: CAC1I (Voltage-dependent T-type calcium channel subunit alpha-1I OS=Homo sapiens GN=CACNA1I PE=1 SV=1)

HSP 1 Score: 466.463 bits (1199), Expect = 1.313e-140
Identity = 255/519 (49.13%), Postives = 356/519 (68.59%), Query Frame = 0

Query:    2 VIADGFISGHGSYLRCGWNVLDFMLVLTSIVDVFITLYFSGTKAQHIEIIKGMRVLRATRALRPLRMIRKAPGLKLVVQTLLFSLKPIGNTVLIATIFFIVFGILGVQQLKGKFYYCFGVTANLVRNKTECIQHPDGVWTNYQYNFDNLLEALMTLFVVSTKDGWIDIMRRGIDARGVDLAPRTNYAQWRILYFVSFLLIGGFLVLNMIVGVVVENFQKCQELQDIQSNKARNVLQKWKKKIEQ---RRNNYWREYPPWRKRIYKLCTSASWDVAITSVICSNVVIMSLEHYQMSEEFHILLEVCNIIFTTTYICEAVLLMVALSPRRYVKNKWYCFDLLVVIVSIISIFFDYLNVHIS-NVNPAAIKAMRLLRVIRALKLLKMAKGLRFLLNHVAETIPQVTNLALLFSLLFFVYSCLGIQLFGTLECTNRFPCAGLGRHANFKTLGNSMLTLFRIATGDNWSGIMRDTLRSSCDNSIQCTSNCCVSRYVAPLFFVSFVLFAQFVLVNIVIAVLMKHL 516
            V++ G   G  +YLR  WNVLD  LV  SI+D+ ++L  +G      +I+  +RVLR  R LRPLR+I +APGLKLVV+TL+ SLKPIGN VLI   FFI+FGILGVQ  KGKFY+C GV    + N+++C+   +  W +++YNFDNL +ALM+LFV+++KDGW++IM  G+DA  VD  P TN+  W +LYF+SFLLI  F VLNM VGVVVENF KC++ Q+ +  + R   +  + + ++   +R  Y+  Y   R  I+ +CTS   D+ IT +IC NVV MSLEHY         L+ CN +FTT ++ EAVL +VA   RR+ K++W   DL +V++S++ I  + + ++ +  +NP  I+ MR+LR+ R LKLLKMA G+R LL+ V + +PQV NL LLF LLFF+Y+ LG++LFG L C +  PC G+ RHA F+  G + LTLF+++TGDNW+GIM+DTLR    +   C S+    ++V+PL+FVSFVL AQFVL+N+V+AVLMKHL
Sbjct: 1223 VVSLGLYFGEQAYLRSSWNVLDGFLVFVSIIDIVVSLASAGGA----KILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNRSDCMA-ANYRWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYNGLDAVAVDQQPVTNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRLPYYATYCHTRLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVLKLVAFGLRRFFKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRDCTHDERSCLSSL---QFVSPLYFVSFVLTAQFVLINVVVAVLMKHL 1733

HSP 2 Score: 100.138 bits (248), Expect = 3.683e-21
Identity = 78/306 (25.49%), Postives = 146/306 (47.71%), Query Frame = 0

Query:  248 NNYWREYPPWRKRIYKLCTSASWDVAITSVICSNVVIMSLEHYQMSEEFHILLEVCNIIFTTTYICEAVLLMVALSPRRYVKNKWYCFDLLVVIVSIISIFFDYLNVHISNVNPAAIKAMRLLRVIRALKLLKMAKGLRFLLNHVAETIPQVTNLALLFSLLFFVYSCLGIQLFGTLECTNRFPCAGLGRHANFKTLGNSMLTLFRIATGDNWSGIMRDTLRSSCDNSIQCTSNCCVSRYVAPLFFVSFVLFAQFVLVNIVIAVLMKHLRVTTNGKKKRKDLKKLS---KKRDK-QSSLDEESHKK 549
             + WRE    R ++  +  S  ++  I   I  N V M +EH++  EE   +LE+CN++FT+ +  E +L + A     Y++N +  FD ++VI+SI           I       +  +R  R++R LKL++    LR  L  + +T+  V    +L  L  F++S LG+ +FG            +    NF +L  +++T+F+I T ++W+ ++ + + S+                 A L+FV+ + F  +VL N+++A+L++  +   +  +   D  + S   ++ DK Q  LD     K
Sbjct:  623 GDVWRET---RAKLRGIVDSKYFNRGIMMAILVNTVSMGIEHHEQPEELTNILEICNVVFTSMFALEMILKLAAFGLFDYLRNPYNIFDSIIVIISIWE---------IVGQADGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLRTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSP--------------WASLYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSDEDQSSSNIEEFDKLQEGLDSSGDPK 902

The following BLAST results are available for this feature:

BLAST of TCONS_00049807-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049807-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CAC1I	1.313e-140	49.13	Voltage-dependent T-type calcium channel subunit a...	[more]

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TCONS_00049807-protein (polypeptide) - C. hemisphaerica