TCONS_00049811-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049811-protein
Unique Name	TCONS_00049811-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	340

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049811-protein ID=TCONS_00049811-protein|Name=TCONS_00049811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MTRVITQDSVETFAWVFLHKRNFFRRKLISLVGWRWFERIVILVIILNCI
MLALYNPMDKYCQTSRCSMLEKLEHFIFSFFLIEMLVKMTAMGIFGSKGY
FTDRWNLFDFLIVVTGIVESLGTTGGFLTTVRLCRILRPLRAINRVPNIR
ILVNLLMDTIPMLGNVLILAFLVFACFGILGVQLFQGKLRSRCYWSGDTN
VDHSLNDTLAVNRSKFPEFYIPTTSVDYVCHLPHDFGSRSCDQIPKHYDF
KLCQTYYNLYDQKFENATANNSCLDARRYYRSCRQDGPNPYYGSVSFDNI
ALAFVFIYQVVTLEGWSDLMYLVQDSYSSYAWIYFITLIS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031574	XLOC_031574	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049811	TCONS_00049811	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.70		coord: 33..340 e-value: 2.3E-49 score: 167.3
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 293..339 coord: 34..188
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 35..339 e-value: 2.2E-55 score: 187.5

Blast

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BLAST of TCONS_00049811-protein vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4)

HSP 1 Score: 238.039 bits (606), Expect = 1.956e-70
Identity = 142/323 (43.96%), Postives = 200/323 (61.92%), Query Frame = 0

Query:   25 RRKLISLVGWRWFERIVILVIILNCIMLALYNPM-DKYCQTSRCSMLEKLEHFIFSFFLIEMLVKMTAMGIFGSKGYFTDRWNLFDFLIVVTGIVE-SLGTTGGFLTTVRLCRILRPLRAINRVPNIRILVNLLMDTIPMLGNVLILAFLVFACFGILGVQLFQGKLRSRCYWSGDTNVDHSLNDTLAVNRSKFPEFYIPTTSVD---YVCHLPHDFGSRSCDQIPKHYDFKL-CQTYYNLYDQKFEN--ATANNSCLDARRYYRSCRQDGPNPYYGSVSFDNIALAFVFIYQVVTLEGWSDLMYLVQDSYSSYAWIYFITLI 339
            R   + LV   WFE + +LVI+LNC+ L ++ P  D  C + RC++LE  + FIF+FF +EM++KM A+G+FG K Y  D WN  DF IVV G++E SL      L+ +R  R+LRPLRAINRVP++RILV LL+DT+PMLGNVL+L F VF  FGI+GVQL+ G LR+RC+      +D +    +  N   F   Y  T   +   ++C    D G + C  IP   + ++ C   +  Y Q        A N+C++  +YY  CR    NP+ G+++FDNI  A++ I+QV+TLEGW D+MY V D++S Y +IYFI LI
Sbjct:   90 RSWCLRLVCNPWFEHVSMLVIMLNCVTLGMFRPCEDVECGSERCNILEAFDAFIFAFFAVEMVIKMVALGLFGQKCYLGDTWNRLDFFIVVAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCF------LDSAF---VRNNNLTFLRPYYQTEEGEENPFICSSRRDNGMQKCSHIPGRRELRMPCTLGWEAYTQPQAEGVGAARNACINWNQYYNVCRSGDSNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLI 403

HSP 2 Score: 92.4337 bits (228), Expect = 2.325e-20
Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 0

Query:    9 SVETFAWVFLHKRNFFRRKLISLVGWRWFERIVILVIILNCIMLALYNPMDKYCQTSRCSMLEKLEHFIFS-FFLIEMLVKMTAMGIF-GSKGYFTDRWNLFDFLIVVTGIVE---SLGTTGG-----FLTTVRLCRILRPLRAINRVPNIRILVNLLMDTIPMLGNVLILAFLVFACFGILGVQLFQGKL 189
            S E +A      +N FR     ++  + F+ +V++ I LNC+ +AL  P      T R  +   + ++IF+  F+ EM+VK+ A+G+  G   Y    WNL D L+V+  +V+   ++ + GG      L  +RL R LRPLR I+R P ++++V  L+ ++  +GN++++    F  FGILGVQLF+GK 
Sbjct: 1268 SREAWALYLFSPQNRFRVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTERVFL--SVSNYIFTAIFVAEMMVKVVALGLLSGEHAYLQSSWNLLDGLLVLVSLVDIVVAMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKF 1456

The following BLAST results are available for this feature:

BLAST of TCONS_00049811-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049811-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CAC1H	1.956e-70	43.96	Voltage-dependent T-type calcium channel subunit a...	[more]

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TCONS_00049811-protein (polypeptide) - C. hemisphaerica