TCONS_00049818-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049818-protein
Unique Name	TCONS_00049818-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	474

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049818-protein ID=TCONS_00049818-protein|Name=TCONS_00049818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
NFRIKIKMSLAAPMFRWLDLLEKEFDKAFVELDVLLGDIDEDQSEITFAG
RQKLTALSSAFAQLAHKSQTIFQSNAKFEAELLSLRTSMTESQAKVTVME
KELKNTLLQLHAVQLQLHSNTNTENPIDSNVILNRLENELTTFRRDAMKE
TQLKAEVNQYQKENDNLRRDVLTLQGEVYGARLAAKYLDKELAGRIQQIQ
LLGRNLKSEEHNLLWNQIESEIHLHRHKTVIRACRGRPGVNNKVTSKVPP
REEINEDDDVASVQRKKRGIGEARLVKMRREKHEGLGISITGGKEHGVPI
IISEIHEDMPAQRCQDLYVGDAILSVNATDLKDSTHSQAVHVLSRVHGDI
TMEVLYVDVDESAEEDDNWEEDAEQRYSSVGLVDDPFTLTSNENNEIVMT
NSPSKSSIKKTSAYTYATPAFSKLDENESEKNQDKETEKITSNGSVVRDS
HLLRNSSTSSGGKYPGMLKRVDPS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031580	XLOC_031580	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049818	TCONS_00049818	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001478	PDZ

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..177
None	No IPR available	GENE3D	1.10.287.540		coord: 150..223 e-value: 0.018 score: 14.5
None	No IPR available	GENE3D	2.30.42.10		coord: 272..414 e-value: 1.7E-20 score: 72.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 423..474
None	No IPR available	CDD	cd00992	PDZ_signaling	coord: 274..355 e-value: 3.64209E-19 score: 81.0738
IPR001478	PDZ domain	SMART	SM00228	pdz_new	coord: 284..358 e-value: 1.1E-12 score: 58.1
IPR001478	PDZ domain	PFAM	PF00595	PDZ	coord: 276..355 e-value: 4.7E-14 score: 52.4
IPR001478	PDZ domain	PROSITE	PS50106	PDZ	coord: 275..358 score: 18.797
IPR001478	PDZ domain	SUPERFAMILY	50156	PDZ domain-like	coord: 268..356

Blast

[Close]

BLAST of TCONS_00049818-protein vs. Swiss-Prot (Human)
Match: GOPC (Golgi-associated PDZ and coiled-coil motif-containing protein OS=Homo sapiens GN=GOPC PE=1 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 3.692e-138
Identity = 210/384 (54.69%), Postives = 277/384 (72.14%), Query Frame = 0

Query:    8 MSLAAP----MFRWLDLLEKEFDKAFVELDVLLGDIDEDQSEITFAGRQKLTALSSAFAQLAHKSQTIFQSNAKFEAELLSLRTSMTESQAKVTVMEKELKNTLLQLHAVQLQLHSNTNTENPIDSNVI--------LNRLENELTTFRRDAMKETQLKAEVNQYQKENDNLRRDVLTLQGEVYGARLAAKYLDKELAGRIQQIQLLGRNLKSEEHNLLWNQIESEIHLHRHKTVIRACRGRPGVNNKVTSKVPPREEINEDDDVASVQRKKRGIGEARLVKMRREKHEGLGISITGGKEHGVPIIISEIHEDMPAQRCQDLYVGDAILSVNATDLKDSTHSQAVHVLSRVHGDITMEVLYV--DVDESAEEDDNWEEDAEQRY 377
             S+ AP    MFRWL++LEKEFDKAFV++D+LLG+ID DQ++IT+ GRQK+T+LSS FAQL HK+Q++ Q N K EA+L+ L++ +TE+QA+  V+EKE+ + LLQLH++QLQLH+ T      DS  I        +  LE EL   +++ MKE QL+AEV   +KEN+ LRR +  LQ EVYGARLAAKYLDKELAGR+QQIQLLGR++K   H+ LWNQ+E+EIHLHRHKTVIRACRGR  +  K   + PP      D D     +K +G+G  R V + +E HEGLGISITGGKEHGVPI+ISEIH   PA RC  L+VGDAIL+VN  +L+D+ H +AV +LS+  G+I  EV+YV  +VD S +E+  +E+++  RY
Sbjct:   20 CSVGAPGGVSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQADITYEGRQKMTSLSSCFAQLCHKAQSVSQINHKLEAQLVDLKSELTETQAEKVVLEKEVHDQLLQLHSIQLQLHAKTG--QSADSGTIKAKLSGPSVEELERELEANKKEKMKEAQLEAEVKLLRKENEALRRHIAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGRDMKGPAHDKLWNQLEAEIHLHRHKTVIRACRGRNDL--KRPMQAPP----GHDQDSL---KKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVAPEVD-SDDENVEYEDESGHRY 391

The following BLAST results are available for this feature:

BLAST of TCONS_00049818-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049818-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GOPC	3.692e-138	54.69	Golgi-associated PDZ and coiled-coil motif-contain...	[more]

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TCONS_00049818-protein (polypeptide) - C. hemisphaerica