TCONS_00049850-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049850-protein
Unique NameTCONS_00049850-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049850-protein ID=TCONS_00049850-protein|Name=TCONS_00049850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MADVYGRKKTLIVAVTFQVYFVLLSVASDSYVLHVVLRFLVGVGYGGCIV
LTVVYSTEFTSRRNHAKAVLFLNDIFIFGSLAAIGVSYFTLTLYGWRNFI
LWSILPYILLICLMLLMPESIRFLSINGETDKVSDMLDEIAMTSIITLPA
NFHGEEISTGRHITKGQSPGYFTVFTKHWKKILGLSINGVPIFLSFYGIP
FFIDYKIQHPSSCGFNDATVMMKCAPLTDSQILRSFWINFGLLPGSIIGY
FVVEKQGRKILLGFTTILMAISYFTQLLCLPSVMTYVLLFLSSGFGSSST
CFLFLFSSELFPTNIRSTASGISATIWKVFSILSPLLFQHLIYIEWNFVV
VFMGSLSVLGIVGLGLLPETLGQNLNDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031609XLOC_031609Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049850TCONS_00049850Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 162..378
e-value: 8.1E-20
score: 70.4
NoneNo IPR availableGENE3D1.20.1250.20coord: 1..134
e-value: 1.2E-16
score: 60.1
IPR005828Major facilitator, sugar transporter-likePFAMPF00083Sugar_trcoord: 2..377
e-value: 8.3E-28
score: 97.3
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 1..372
score: 28.073
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 1..368
e-value: 6.26618E-10
score: 57.7089
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 1..376

Blast
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BLAST of TCONS_00049850-protein vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.866e-28
Identity = 89/384 (23.18%), Postives = 175/384 (45.57%), Query Frame = 0 
Query:    1 MADVYGRKKTLIVAVTFQVYFVLLSVASDSYVLHVVLRFLVGVGYGGCIVLTVVYSTEFTSRRNHAKAVLFLNDIFIFGSLAAIGVSYFTLTLYGWRNFILWSILPYILLICLMLLMPESIRFLSINGETDKVSDMLDEIAMTSIITLPANFHGEEISTGRHITKGQSPGYFTVFTKHWKKILGLSINGVPIFLSFYGIPFFIDYKIQHPSSCGFN------DATVMMKCAPLTDSQILRSFWINFGLLPGSIIGYFVVEKQGRKILLGFTTILMAISYFTQLLCLPSVMTYVLLFLSSGFGSSSTCFLFLFSSELFPTNIRSTASGISATIWKVFSILSPLLFQHLIYIEWNFVVVFMGSLSVLGIVGLGLLP-ETLGQNLND 377
            ++D YGRK  L ++V + +Y+ +LS  +  Y   +VLR LVG G GG +  +V    EF   +  AK +L +   +  G++  + ++ F +   GWR  ++ S +P +L   L   +PES R+  ++G  +K    L  IA  +   +P      ++   R   +G+    FT   + W  +L   I     F S+YG+        Q    CG +      +A   + C  L++   +   W      PG ++  +++++ GRK  +    ++ +       +C+   +  +LLF++  F S      ++++ E++PT  R+   G  + + +V ++++P + Q ++       +       +L  +    LP ET G+ L +
Sbjct:  143 ISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGG-VPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLG----KLIISRQEDRGKMRDLFTPHFR-WTTLLLWFIWFSNAF-SYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519
The following BLAST results are available for this feature:
BLAST of TCONS_00049850-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP3.866e-2823.18Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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