TCONS_00049861-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049861-protein
Unique NameTCONS_00049861-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049861-protein ID=TCONS_00049861-protein|Name=TCONS_00049861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp
MQRYLIRMLSRGGYHFNKFNKNDTFTRQQQIQFKSRSIGGLDKLESGHLM
RYANDLLGLLQDGQDPIEKDIKKWRNDLSGILFQYSKRKEDTNLEKLFKH
MLSRREANEASYTIMMRHYSNLEDFEKVKSYFEHMKENDIIYHGRTFIPL
ITLCLKLERYKKAERYFDLLLQSSRSKFIHNAFVDLIRSCGEIRTDLNEQ
HLEKMVNSSLKTLEKFGCEPIGQADAESLEKWFKSTTKIKWRLTEVDVAN
DSRKCPCCNAHFKKNTISQKRMVRLKRNMMAYVESNIALKANSKIADVDR
KRRNKKIREVIQRQADHYGFYDTLISGSKDDFRELSSTKKSTQNDIYNVL
GKLENYLDSNGPFDVVMDASNIGYYTKGFNPLQVRDVADEFKDQKCLILC
AGILKEKLLTQNPVPNANVRLKNLLLYLQKNHHIFFVGSSVLDDYYILYT
ILYHNFDIGFVSRDLLRDHLYHLDSTSRVDFQRWQAANQYILQSFTDDNK
PVFSGRLETKISVQSSPTGWHIPKSTSNWICVQEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031619XLOC_031619Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049861TCONS_00049861Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR002885Pentatricopeptide_repeat
IPR031595PRORP_C
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 81..243
e-value: 2.1E-10
score: 39.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 111..140
e-value: 6.3E-4
score: 19.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 111..140
e-value: 1.3E-5
score: 23.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..177
score: 5.81
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 108..142
score: 8.934
IPR031595Protein-only RNase P, C-terminalPFAMPF16953PRORPcoord: 349..527
e-value: 1.3E-27
score: 96.8

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049861-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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