TCONS_00049865-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049865-protein
Unique NameTCONS_00049865-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049865-protein ID=TCONS_00049865-protein|Name=TCONS_00049865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
TNMIQGYSIFKMAAKFSTISFVFFLLFQTSNCNESESSPLLFKIEGKVSV
SKDRSRPTDWQSETSILVDSGAYKGFLKSDGTFVINNIPSGSYIVEVASA
NYLFDRFRVDINKGGKIRARQLNLLQPKAVHVVPYPLRFVASKPAPFFEI
RETMKVTDFLFNPMVIMMVLPLIFVVIMPKMMSMADPEAQKEMQEQMGKY
NQPQIPELSEMFSNMFAGGAEKKRTKPSLASSDRGPAKRSTKRPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031620XLOC_031620Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049865TCONS_00049865Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019008DUF2012
IPR013784Carb-bd-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019008Domain of unknown function DUF2012PFAMPF09430DUF2012coord: 57..167
e-value: 6.5E-30
score: 103.7
NoneNo IPR availableGENE3D2.60.40.1120coord: 44..128
e-value: 1.0E-4
score: 22.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..245
IPR013784Carbohydrate-binding-like foldSUPERFAMILY49452Starch-binding domain-likecoord: 64..117

Blast
[Close]
BLAST of TCONS_00049865-protein vs. Swiss-Prot (Human)
Match: EMC7 (ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.763e-50
Identity = 81/176 (46.02%), Postives = 119/176 (67.61%), Query Frame = 0 
Query:   42 FKIEGKVSVSKDRSRPTDWQSETSILVDSGAYKGFLKSDGTFVINNIPSGSYIVEVASANYLFDRFRVDINKGGKIRARQLNLLQPKAVHVVPYPLRFVASKPAPFFEIRETMKVTDFLFNPMVIMMVLPLIFVVIMPKMMSMADPEAQKEMQEQMGKYN-QPQIPELSEMFSNMF 216
            FKIEG+  V     +P DW S   +LVD   + GFLK+DG+FV+++IPSGSY+VEV S  Y FD  RVDI   GK+RAR +N ++   V  +PYPL+  +S P  +F  RE+   TDFL NPMV+MMVLPL+  V++PK+++ +DP+ ++EM++ M   N   ++P++SE  + +F
Sbjct:   45 FKIEGRAVVPG--VKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSKGKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLF 218
The following BLAST results are available for this feature:
BLAST of TCONS_00049865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMC71.763e-5046.02ER membrane protein complex subunit 7 OS=Homo sapi... [more]
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