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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00050256-protein ID=TCONS_00050256-protein|Name=TCONS_00050256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1202bp
MDKSTLLSILLVTFAFLQNFRICESKDNQINFRIYESNVGTDGPAIEGYS
QANLIGSSSSNQAITNEVDWSDVDITDPQDASLIGTTDQKQQIPSDDPHP
SGQHKHLTDNAIIYHKDNEPSHYGVSRYPPYITENGTHVYGPPDKDRSQT
SPNPQYPPRAPVPPEPLLQIPSEQPDRNQPLTVGQVGGNQDTPTLLTSSN
NNQSPASNSSGPTLGNFTIGLLALGKALMGGFNDMSPNNQTKNATTPQRG
VYLVDDARCKNYTTQICHQKWMQKHCPDMCRGHTQTPSPKPATTMITPAT
TTITPATTTQVPTNAPQVCCPCAMPATQCPCVPPPCPTPVAPTAATMSPA
TPVAPTAATLSPATPVAPTAATMSPATPVAPSSATFSPAKTTLSNSVDDQ
QKVVEDPQCKLYPKETCNTPFMQLTCPQTCMEALQPPKEAVITTPPPVSL
TSTLTPTIAKESSKCKQPTTSGGCCKFPFKYQNTPIYDCLPSSNNKTWCA
TTDDFDKDAQWGECGTPTETMVTLAPITTSVPTTVTMQTQTTQAPQTQTT
TPQVCCPCAGGYFECQCQPPPCPPTNMTTPAPTPVLCCPCSGGATDCPCV
QPPCPSVVPTTTPSGMVCDPWPKFGPCSKTCGGGEQFRTRNCTISDGSVI
QENEKHLCGMQPCPIDYTEWSQWSECLNGKQWRNRTGTWEDLGYNITIPY
IESRPCQDECERASEWTDWSECTKTCDGGIQYRTRDCFKGTLMTKEQENR
TCNTQPCTEECGDWSAFSDCSKTCGGGMKTRWRTCGGSIVEDKLPCNETP
CPSANETDYECGDWVDWGQCSATCNGMQSRYRHCKNHTLEFDEMQTRPCN
TNPCPGTPGPPTTATIPITTTPITTTTSVPTTTPSGSVIPFEECLVAYLS
FDVVDTIKKLVYDEGPYGNDFTYNGNVKFLPANYSCKNAASINSDGDLYY
AGPGFTNSPDKGATIAMWVHPTDLMHKQSIFTSKAIGSKGANLQLDLEAG
KVRWLYNDLSGQNNFTVVTDAVIAADEWVHIAATYNSTTQEAKVFINAKE
MGVASNIQNASELLPWNMFAALFPPVYENKFKGLIDEFYVYNCSLTIEQI
LVIADNCKDEGGKVCPSPLLGVCPPCEGCERNITTTPLPPINGGYSEWSN
WTSCSVTCGTGLKYRGRVCDNPEPQNGGLDCSEQPQLGNDTEAQQCVMQN
CP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000562 | Fibronectin, type II, collagen-binding | SMART | SM00059 | FN2_2 | coord: 468..514
e-value: 2.7E-5
score: 25.2 |
| IPR000562 | Fibronectin, type II, collagen-binding | PFAM | PF00040 | fn2 | coord: 475..514
e-value: 1.5E-11
score: 44.3 |
| IPR000562 | Fibronectin, type II, collagen-binding | GENE3D | 2.10.10.10 | | coord: 464..514
e-value: 3.3E-11
score: 42.4 |
| IPR000562 | Fibronectin, type II, collagen-binding | PROSITE | PS51092 | FN2_2 | coord: 470..516
score: 15.679 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SMART | SM00209 | TSP1_2 | coord: 618..664
e-value: 3.3E-7
score: 39.9
coord: 667..711
e-value: 2.7
score: 5.4
coord: 761..802
e-value: 1.7E-6
score: 37.6
coord: 811..855
e-value: 1.6E-10
score: 51.0
coord: 1145..1202
e-value: 2.2E-16
score: 70.4
coord: 713..758
e-value: 5.9E-10
score: 49.1 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PFAM | PF00090 | TSP_1 | coord: 714..757
e-value: 3.9E-7
score: 30.1
coord: 812..854
e-value: 8.9E-6
score: 25.7
coord: 1146..1201
e-value: 2.3E-11
score: 43.6
coord: 620..663
e-value: 9.3E-6
score: 25.7
coord: 762..798
e-value: 3.6E-6
score: 27.0 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | GENE3D | 2.20.100.10 | | coord: 810..855
e-value: 8.1E-7
score: 28.9
coord: 614..663
e-value: 3.9E-6
score: 26.7 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | GENE3D | 2.20.100.10 | | coord: 709..757
e-value: 7.0E-8
score: 32.2
coord: 1141..1201
e-value: 1.5E-13
score: 50.4
coord: 760..809
e-value: 7.2E-6
score: 25.7 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 808..855
score: 11.226 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 759..802
score: 9.697 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 1142..1202
score: 12.933 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 615..664
score: 9.306 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 710..758
score: 11.673 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 1140..1201 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 761..801 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 615..663 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 807..854 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 710..754 |
| None | No IPR available | GENE3D | 2.30.90.10 | | coord: 664..708
e-value: 0.58
score: 10.3 |
| None | No IPR available | GENE3D | 2.60.120.200 | | coord: 890..1112
e-value: 4.0E-27
score: 95.1 |
| None | No IPR available | PFAM | PF13385 | Laminin_G_3 | coord: 953..1100
e-value: 5.0E-20
score: 72.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 861..882 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 77..105 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 119..213 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 361..394 |
| IPR013806 | Kringle-like fold | SUPERFAMILY | 57440 | Kringle-like | coord: 469..515 |
| IPR013320 | Concanavalin A-like lectin/glucanase domain | SUPERFAMILY | 49899 | Concanavalin A-like lectins/glucanases | coord: 887..1107 |
Blast
BLAST of TCONS_00050256-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 4.803e-22 Identity = 92/284 (32.39%), Postives = 120/284 (42.25%), Query Frame = 0
Query: 621 WPKFGPCSKTCGGGEQFRTRNCT----ISDGSVIQENEKHL--CGMQPCPID--YTEWSQWSECLN----GKQWRNRT--------GTWEDLGYNITIPYIESRPCQDECERASEWTDWSECTKTCDGGIQYRTRDC------FKGTLMT-KEQENRTCNTQ--PCTEECGDWSAFSDCSKTCGGGMKTR------------WRTCGGSIVEDKLPCNETPCPSANETDYECGDWVDWGQCSATCNGMQ-SRYRHCKN-------HTLEFDEMQTRPCNTNPCP 855
W + CS TCG G Q R+R C + G Q ++ + C +PCP+D ++EWS W EC G Q R RT G G + I RPC S W W C+++C G Q R R C F G+ E + + CN + P + W+++S CS +CGGG + R R C GS V+ CN PCP T W WG CS TCNG Q RYR C N + Q + CNT+ CP
Sbjct: 4535 WSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGA-WSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-CNSDPCP----THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 2 Score: 97.8265 bits (242), Expect = 2.919e-20 Identity = 86/289 (29.76%), Postives = 119/289 (41.18%), Query Frame = 0
Query: 621 WPKFGPCSKTCGGGEQFRTRNC---TISDGSVIQEN---EKHLCGMQPCPIDYTEWSQW-------SECLNGKQWRNRT---------GTWEDLGYNITIPYIESRPCQDECERASEWTDWSECTKTCDGGIQYRTRDC------FKGTL-MTKEQENRTCNTQPCTEECGDWSAFSD---CSKTCGGGMKTRWRTC-------GGSIV----EDKLPCNETPCPSANETDYECGDWVDWGQCSATCNGMQSRYRHCKNHTLEF--------DEMQTRPCNTNPCPGTP 858
W + C+++CG G Q RTR C ++ G E E +C ++PCP+ + WS W C G Q R R G++ D G + R C + A+ W WS C+ +C GG + RTR C + G + ++ CN+ PC G+WS +S CS+TC GG R+RTC GG CN CP D G W W QCSA+C G + + +H + D Q CN CPG P
Sbjct: 4592 WSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPV-HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD-GAETQMQVCNERNCPIHGKWAT-WASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTH-GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP----VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGP 4872
The following BLAST results are available for this feature:
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