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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00050309-protein ID=TCONS_00050309-protein|Name=TCONS_00050309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3054bp
FTVDDNNYYRYVLNSPITFYELILGAVSTASGFPTNWFFQLEDDSWISAP
PHTVLEFNSSTPYHAILFQQFLTIKAIELKSISGSTVNICPKTINFMGGN
VLLTYVHPSNGGTYVMSNGNEPNVLAGDELQISFQLHPKLLGRDLHLHIA
KSFFDLSVNHTKITLVKTFAQAGEHKISLREKSLITGIYDSIWPTSFPKL
KVYTNTDEPQIRRFGVGDGLPDPLLPINGFYEFNFEVVGSIYNASIWVTG
NVLSDQSVRDEFSQGNHLVYTYKIAADVVDDGYYDDIHIVVVVAVPETSS
LAIRDILQIDVFEPTTTTTTTTTTTTTTTTTPTTTTPTTTTTTTLPPTTT
ITLAPEITPEQEAALTELSSTIMSNSQDETIDIVSEIAGGVTDNIVQCRV
LNHDNTITIAQISCDSDPSLYAFFECDQITLKFTLRIDKILYPTFNMNCS
NKNGLIFANAMDSDNAKDMFGMIGGGMTSASPSFPWVDVEILPGTSIPSN
YQPDIKYAKIFRKFPNNTEEILDDDVVIHDLANLGTFRIEYSIHQIVQEA
GEITRIEIAFNTGTEYVQLISRYWVIPVFDVYSSKKSFIPSTGSFVDGYH
NLTVKTTYTKAPNVDYQMEVFVDHSSGELDHFISTKSEYQYEPPNPTKCY
RIHVQITGEQVLPYESPIIEKCTKPGLKLQAKYDKGQSIGQESIFEMTVN
NTDPNSCIAFNTGDGIVKVYKPSASAPNYCVSRYNLIAGLTTVEIETLDF
DTTNTFVATHTYASSGDYIAQLIAFNDVHHQVENLTVSILNVVCQSPTLQ
LLGVTAEERDRKQYQKSENVKIEIDININCAASNTTSTQWIIKNGELYDQ
VVTLNDLVPLDLLYLDLKSGSLDYGKYHICAKTSMTVEPKFYDEACGYFE
ITSTPLSVEIEGGEFVQIPSETDYMIDVTKSFDPDVGNGDSLTYYILCRR
ENDPQMNLNLSSILQLTITEPSPVPITDVNNKGGCYGTNPGILRQDKHGI
VTLKSNFVPLNISYEIIVYARSELPADEPRIKIVYQKLKVIPGNPPSCKI
KPMTKGGTFQKYINPDQTHKLEAEVDSTNKANIYFKWSLSRCTDELSSDC
VQLTDEELGSLVTTGLSNLFYGVSPDRYQPNQWYLVKFRAHRTADIYGES
SFRFLVNESPKNGNCDINPKTGVAAVDKFTITCKDWTDQHQPMKYSYYTK
QNNVRAPIKDGTEKNSYTSQLPLPSSKDGSLTIYIDVSDRHDSKTTVSFN
VTVTKPEQIDSIITDVTDSFDSSTSVIGELIQSKDADSLNNVVAGFVSLV
NEATGSSAPSNSSNMTATEKNALKDEQSKRMELRAKAADTVMDNMPVSDL
ESLNRVTGTLASICEHPNEIGKDTQAKMMNAADGYFDVIANVQDDNAFLG
ALGGVLNIMGKVGEASANVLDVNNQNASDTELLKEQFGESDAAKNEVKAQ
VQKAIDGFDKTQNMIKERCVPGGDALIVESSNAALGVKLALRNGGNAKMD
VGGAAVSINLDILGQNDGDDVEKASNFTATKVKKVNFNLYTTDTSATAVK
SALTSINLESKGGSKLTVKDVKEPIVLYVVNNKPPPKRNAQGEVVDNEEE
EKEEETNTMSVNDDGTQVSYHKHSIHNESFLSLFDVQQFGRPITIRLKQN
KKPTETIFDYEWNLPDNYSCTWNNKTLYENQTIDIFTDWPDLVTCHQHPW
SVFISDDADLDGDFWMSVSYTPPPEEENTISDGKSRRRRNTVTTQKIDVD
KVDEEYCVVIKPPPPTPAPTLGPGSFAAIEPRITNDSTNYTLDVTKSKCL
FWNTVNETWESNGCWVGPGTTAEKTECLCTHLTDFGGDVMVAPNPIDMGA
VFEGLKNLGDNLGVLMVILTIFIIYTILCVWARKKDRQDEIDKRLVTVDC
TRGEEVKQTLLFNVITGAGHSSGTTAKVFCIVSGKNGSSEIIPLCYKDKS
LFKSRSTVPIKVMLAKDLGDIDCIRVFHDNSGRSPSWYLRSILVTDTNTR
KEYPFVCDKWLAVESDDGLIERLLSVASEKELKKFHLVFASTISKGLLDG
HIWFSVFLRPKQSSFTCVRRLSACLALIFLTMLTNAMFFGVGDNPANRKI
VWLGEFKINFTGIMIGIQSSIIVIFPSVIIIEVFRRLAPPKTKPKDKDST
TNNQDSLDNSMENEEEEEQQLISQAEGKKDKGPFLLPNQFKYVAYFFVVA
SSGSSAIVCFFYSMMWGPKKSNEWLASMFAGFFQSVLVIQPIKAVFLAIL
LAAICRKPVKTEAAQEEDVQVVDKKDKKKKKTKKVTSEEDEEEAFEDEVE
DMAGDDGIITADEVPIIRPSDSEIERSRKSKIRDKMTSIVIKDIFTYICF
LGIVGKLAYSERDMHAYWFREDLVNMFKYAKYSNGGMQFESVSNNGYYYT
WIRDTLVPGVFSGPWYNDELLKHQGFIDNHESFLVSIPRIRQVRTEKHSC
VVPDEFKDIIMNCESYYAFEKEDKKDYGVAWTPYNASLVGNTRKRRDSTW
IVRDTGVDKYRYRRAVGGAKAAVGGAYQSMATGRNKQLRRRKQMATGGID
GKPVYYVAPEALLPDGTVVSCKDRWEYFTSTELRGFPVPGRVTSYNGGGY
VSNLGYNEETSWTVLADLHSHNWLDRQSRAVFTEFTVYNGNINLFATAFL
YVENLPTGGALPWADFKIFNGYRYSAKDGLQSLWAEMVFIIFITYFSVRE
IRKMLRFKKEYFRGFFNWVETILMPLYLIMFVLILVRWLTTSANIMSFKE
NPKDFVSFQYSAAADTALMSVIGIVAFLLNIKFLRLLQFAKLFFVTGQVI
KSFAYPLAMFSIPFTLYFLLFAWVANLGFGAVNENYLSISRTIATQFLHL
LGATDFEGTMELSPIFGPMYFLAYTCFMMFIVFNMFMAIICEAVDDDYDE
EFERQAGDIQVIEFMTKRLKELIGINTDEDPIRIDQDDLPEDPTEKLNKT
DQAVTELEMCISRLVRIVEKEESKYTEEELNNDPEDTTNAADEDQNQEME
GENPNQEDDEDAIADGLQTERLPDEDIQPSNVGEAGRQNKKSDCVFNSFE
NIRL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 2147..2181 |
| None | No IPR available | COILS | Coil | Coil | coord: 2278..2298 |
| None | No IPR available | COILS | Coil | Coil | coord: 1587..1607 |
| None | No IPR available | GENE3D | 1.20.120.350 | | coord: 2210..2796
e-value: 5.9E-7
score: 28.4
coord: 2860..3042
e-value: 8.7E-4
score: 18.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2972..3054 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1721..1741 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1304..1327 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2141..2173 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 318..344 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1586..1614 |
| IPR001024 | PLAT/LH2 domain | SMART | SM00308 | LH2_4 | coord: 1908..2022
e-value: 7.2E-5
score: 24.9 |
| IPR001024 | PLAT/LH2 domain | GENE3D | 2.60.60.20 | | coord: 1911..2035
e-value: 9.5E-30
score: 102.8 |
| IPR001024 | PLAT/LH2 domain | PFAM | PF01477 | PLAT | coord: 1912..2017
e-value: 3.2E-14
score: 53.4 |
| IPR001024 | PLAT/LH2 domain | PROSITE | PS50095 | PLAT | coord: 1908..2025
score: 29.855 |
| IPR001024 | PLAT/LH2 domain | SUPERFAMILY | 49723 | Lipase/lipooxygenase domain (PLAT/LH2 domain) | coord: 1911..2019 |
| IPR000203 | GPS motif | SMART | SM00303 | GPS_3 | coord: 1795..1844
e-value: 2.1E-8
score: 43.9 |
| IPR000203 | GPS motif | PFAM | PF01825 | GPS | coord: 1798..1835
e-value: 1.4E-5
score: 25.6 |
| IPR000203 | GPS motif | PROSITE | PS50221 | GPS | coord: 1796..1845
score: 12.141 |
| IPR002859 | PKD/REJ-like domain | PFAM | PF02010 | REJ | coord: 826..1292
e-value: 3.5E-51
score: 174.3 |
| IPR013122 | Polycystin cation channel, PKD1/PKD2 | PFAM | PF08016 | PKD_channel | coord: 2388..2487
e-value: 3.2E-14
score: 52.3
coord: 2572..2893
e-value: 3.3E-64
score: 217.0 |
Blast
BLAST of TCONS_00050309-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 230.72 bits (587), Expect = 4.120e-60 Identity = 122/350 (34.86%), Postives = 205/350 (58.57%), Query Frame = 0
Query: 1797 SKCLFWNTVNETWESNGCWVGPGTTAEKTECLCTHLTDFGGDVMVAPNPIDMGAVFEGLKNLGDNLGVLMVILTIFIIYTILCVWARKKDRQDEIDKRLVTVDCTRGEEVKQTLLFNVITGAGHSSGTTAKVFCIVSGKNGSSEIIPLCYKDKSLFKSRSTVPIKVMLAKDLGDIDCIRVFHDNSGRSPSWYLRSILVTDTNTRKEYPFVCDKWLAVESDDGLIERLLSVASEKELKKFHLVFASTISKGLLDGHIWFSVFLRPKQSSFTCVRRLSACLALIFLTMLTNAMFFGVGDNPANRKIVWLGEFKINFTGIMIGIQSSIIVIFPSVIIIEVFRRLAPPKTKPKD 2146
S C+FW+ V ETW+ +GC VGP T+ +T CLC HLT FG +V N I++ E DN V+ + + ++Y ++ +WAR+KD QD+ + VTV + L V TG + T++KV + G +G E L D +F+ + + LG++ +R++HDNSG PSWY+ +LV D +++ F+C+ WL++ D +++++ VA+E++ K+F +F S G DGHIW+S+F R +SSFT V+R+S C +L+ TMLT+ MF+GV +PA +K+ LG+ + + +MIG++SSI++ +++I+++F+ P K ++
Sbjct: 1280 SHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVK-VTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMD-LGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQN 1627 HSP 2 Score: 146.747 bits (369), Expect = 1.248e-34 Identity = 92/361 (25.48%), Postives = 183/361 (50.69%), Query Frame = 0
Query: 2575 WEYFTSTELRGFPVPGRVTSYNGGGYVSNLGYNEETSWTVLADLHSHNWLDRQSRAVFTEFTVYNGNINLFATAFLYVENLPTGGALPWADFKIFNGYRYSAKDGLQS--LWAEMVFIIFITYFSVREIRKMLRFKKEYFRGFFNWVETILMPLYLIMFVLILVRWLTTSANIMSFKENPKDFVSFQYSAAADTALMSVIGIVAFLLNIKFLRLLQF-AKLFFVTGQVIKSFAYPLAMFSIPFTLYFLLFAWVANLGFGAVNENYLSISRTIATQFLHLLGATDFEGTMELSPIFGPMYFLAYTCFMMFIVFNMFMAIICEAVDDDYDEEFERQAGDIQVIEFMTKRLKELIGINTD-EDP 2931
W+Y + + +G+P+ G++T Y GGGYV LG + + +L L + WLD +RAVF E TVYN N+NLF L +E G A + Y ++ DG + AE+++ +F+ Y+ V + ++M + YF +N +E ++ + + R + ++ + + ++ +SF +AAAD AL +I + L +K LL+ K+ +T + +++ ++ F I L ++ +NL FG +Y ++ T LG ++E ++ SP+ G + FM F+V N+F+++I A + ++++ + + + ++++ + ++ +GI + E+P
Sbjct: 2079 WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFT--DGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWG-DISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSE--EQKYYQLSEEGEIVDLLLMKILSFLGIKSKREEP 2434
The following BLAST results are available for this feature:
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