TCONS_00050324-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050324-protein
Unique Name	TCONS_00050324-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	713

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050324-protein ID=TCONS_00050324-protein|Name=TCONS_00050324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp
RFFSLRRYNSLGCERLRKSKSKMAAFQAGNFEDLQYQVKTDFKEDLNSER
VKCNLSEFKQNTFFYYSDAQKCIYIQPVQSKKGFSQKSQIQKLSLTTAPL
FAVSKLKCSITGNHALLFGKHGLAIVELPRKWGDDNLFEGGKTKIQCRST
ILDQSFYEHHLSIEVVNASWYPGSPTDSHLLVLTTDNCLRIYDITRPEQP
MLRLPLFDNVSEASKSKLSMVLGETVVNMAIAPPKEDSLGNKVYPVYVMQ
ESGDVWVLHCKFAQNRIHVEQQGPLVMNPPADDNYGCNFCTLLCLPTTPV
TLALATKTGTVYNCVVIVGDEEMDEMGNKSVSDYVERFPTESLYVYETIK
LEMNLLNSSRQQVIGDPPELSDIMLIRDKSTTDRYISVSSGGIHTITLPW
VHELSNFFGSDSQHCNQMEKPADVRYLLCTKPVEDSHASVTVCGCSVFED
GSTLMCILSNGEIVPLQLKKPSEQHWEDNKPEAINRHFSSPLRQLRGVGQ
FQTYISKMLVKEATIPIIKCGGSDDLIPPDVYFKLLTKTTQVLREEYIQK
MLLAKAELDKRCKILREKKMEQLEELDLLQNDQTLGDKGEELATKLEQAQ
ENMAAITDRVSKVFRRIQRSSPVLSHEEKEWAQELKLMQNKVNKLKKFSE
VIKTKHQNLVLQSTPMSLVNRSTSKPSMATTQAIKIRGVLKDQGSVISQL
VDEVNALSVRVGT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031861	XLOC_031861	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050324	TCONS_00050324	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019321	Nucleoporin_Nup88
IPR015943	WD40/YVTN_repeat-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 589..616
None	No IPR available	COILS	Coil	Coil	coord: 548..582
IPR019321	Nucleoporin Nup88	PFAM	PF10168	Nup88	coord: 31..710 e-value: 1.4E-149 score: 499.0
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 138..565 e-value: 7.8E-5 score: 21.2

Blast

[Close]

BLAST of TCONS_00050324-protein vs. Swiss-Prot (Human)
Match: NUP88 (Nuclear pore complex protein Nup88 OS=Homo sapiens GN=NUP88 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 4.251e-92
Identity = 212/660 (32.12%), Postives = 339/660 (51.36%), Query Frame = 0

Query:   88 SQIQKLSLTTAPLFAVSKLKCSITGNHALLFGKHGLAIVELPRKWGDDNLFEGGKTKIQCRSTILDQSFYEHHLSIEVVNASWYPGSPTDSHLLVLTTDNCLRIYDITRPEQPMLRLPLFDNVSEASKSKL--------SMVLGETVVNMAIAP----PKEDSLGNK-----VYPVYVMQESGDVWVLHCKFAQNRIHVEQ-QGPLVMNPPADDNYGCNFCTLLCLPTTPVTLALATKTGTVYNCVVIVGDEEMDEMGNKSVSDYVERFPTESLYVYETIKLEMNLLNSSRQQVIGDPPELSDIMLIRDKSTTDRYISVSSGGIHTITLPWVHELSNFFGSDSQHCNQM-----EKPADVRYLLCTKPVEDSHASVTVCGCSVFED--GSTLMCILSNGE--IVPLQLKKPSEQHWEDNKPEAINRH----FSSPLRQLRGV-GQFQTYISKMLVKEATIP-IIKCGGSDDLIPPDVYFKLLTKTTQVLREEYIQKMLLAKAELDKRCKILREKKMEQLEELDLLQND-QTLGDKGEELATKLEQAQENMAAITDRVSKVFRRIQRSSPVLSHEEKEWAQELKLMQNKVNKLKKFSEVIKTKHQNLVLQSTPMSLVNRSTSKPS--MATTQAIKIRGVLKDQGSVISQLVDEVNALSVRV 711
            SQ Q+L     PLF + ++  S T +H  L G  GL ++ELP++WG ++ FEGGK+ + C +T + + F+    S+ + +A+WYP    D H+++LT+DN +RIY +  P+ P   + L    SEA +  L        +  LGET V     P    PK     N       YP+Y++ E+G+ ++ +     +  ++ +  GPL M+P A+DNYG + C +LCLP  P  L +AT++G +Y+CVV+ G+EE D    KS    ++  P  SLYV+E ++LE+ L  +S +    D      + L RD     RY      G+H++ L W+H+L  F GSD +  + +     E+   V ++LCTKP+        + G  +  D  G T++CI S  E  I PL     S  H   + P    R       SPLR L      F+ +I  +L +    P  +K    D   PP+   +LL++ TQV RE+YI K  LAK E+ +R K+L ++K +QLE+L   + + ++L +  E LA K E+A+E    I +R+ K+        PVLS  E++  +EL+L+    ++L+     IK        Q   M  V  S  KP+  ++  Q   I+ +LK++G  I ++V ++N +   V
Sbjct:   96 SQYQRLLCINPPLFEIYQVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAERFFTSSTSLTLKHAAWYPSEILDPHVVLLTSDNVIRIYSLREPQTPTNVIIL----SEAEEESLVLNKGRAYTASLGETAVAFDFGPLAAVPKTLFGQNGKDEVVAYPLYILYENGETFLTYISLLHSPGNIGKLLGPLPMHPAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDHTSEKSWDSRIDLIP--SLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPL-PCRQPAPIRGFWIVPDILGPTMICITSTYECLIWPLL----STVH-PASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRSILQRSVANPAFLKASEKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKELQLIP---DQLRHLGNAIKQVTMKKDYQQQKMEKV-LSLPKPTIILSAYQRKCIQSILKEEGEHIREMVKQINDIRNHV 739

The following BLAST results are available for this feature:

BLAST of TCONS_00050324-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050324-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUP88	4.251e-92	32.12	Nuclear pore complex protein Nup88 OS=Homo sapiens...	[more]

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TCONS_00050324-protein (polypeptide) - C. hemisphaerica