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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050324 ID=TCONS_00050324|Name=TCONS_00050324|organism=Clytia hemisphaerica|type=transcript|length=3184bpRun BLAST on NCBI protein sequence of TCONS_00050324-protein >TCONS_00050324-protein ID=TCONS_00050324-protein|Name=TCONS_00050324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp RFFSLRRYNSLGCERLRKSKSKMAAFQAGNFEDLQYQVKTDFKEDLNSERRun BLAST on NCBI transcript from alignment at scaffold_169:419642..443167+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050324 ID=TCONS_00050324|Name=TCONS_00050324|organism=Clytia hemisphaerica|type=transcript|length=23526bp|location=Sequence derived from alignment at scaffold_169:419642..443167+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_169:419642..443167+ >TCONS_00050324 ID=TCONS_00050324|Name=TCONS_00050324|organism=Clytia hemisphaerica|type=CDS|length=34272bp|location=Sequence derived from alignment at scaffold_169:419642..443167+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050324 vs. Swiss-Prot (Human)
Match: NUP88 (Nuclear pore complex protein Nup88 OS=Homo sapiens GN=NUP88 PE=1 SV=2) HSP 1 Score: 260.381 bits (664), Expect = 1.480e-73 Identity = 208/654 (31.80%), Postives = 332/654 (50.76%), Query Frame = 1
Query: 262 SQIQKLSLTTAPLFAVSKLKCSITGNHALLFGKHGLAIVELPRKWGDDNLFEGGKTKIQCRSTILDQSFYEHHLSIEVVNASWYPGSPTDSHLLVLTTDNCLRIYDITRPEQPMLRLPLFDNVSEASKSKL--------SMVLGETVVNMAIAP----PKEDSLGNK-----VYPVYVMQESGDVWVLHCKFAQNRIHVEQ-QGPLVMNPPADDNYGCNFXXXXXXXXXXXXXXXXXKTGTVYNCVVIVGDEEMDEMGNKSVSDYVERFPTESLYVYETIKLEMNLLNSSRQQVIGDPPELSDIMLIRDKSTTDRYISVSSGGIHTITLPWVHELSNFFGSDSQHCNQM-----EKPADVRYLLCTKPVEDSHASVTVCGCSVFED--GSTLMCILSNGE--IVPLQLKKPSEQHWEDNKPEAINRH----FSSPLRQLRGV-GQFQTYISKMLVKEATIP-IIKCGGSDDLIPPDVYFKLLTKTTQVLREEYIQKMLLAKAELDKRCKIL-REKKMXXXXXXXXXXXXXXXGDKGEELATKLEQAQENMAAITDRVSKVFRRIQRSSPVLSHEEKEWAQELKLMQNKVNKLKKFSEVIKTKHQNLVLQSTPMSLVNRSTSKPS--MATTQAIKIRGVLKDQGSVISQLVDEVN 2115
SQ Q+L PLF + ++ S T +H L G GL ++ELP++WG ++ FEGGK+ + C +T + + F+ S+ + +A+WYP D H+++LT+DN +RIY + P+ P + L SEA + L + LGET V P PK N YP+Y++ E+G+ ++ + + ++ + GPL M+P A+DNYG + C +LCLP P L +AT++G +Y+CVV+ G+EE D KS ++ P SLYV+E ++LE+ L +S + D + L RD RY G+H++ L W+H+L F GSD + + + E+ V ++LCTKP+ + G + D G T++CI S E I PL S H + P R SPLR L F+ +I +L + P +K D PP+ +LL++ TQV RE+YI K LAK E+ +R K+L +KK + + + ++L + E LA K E+A+E I +R+ K+ PVLS E++ +EL+L+ ++L+ IK Q M V S KP+ ++ Q I+ +LK++G I ++V ++N
Sbjct: 96 SQYQRLLCINPPLFEIYQVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAERFFTSSTSLTLKHAAWYPSEILDPHVVLLTSDNVIRIYSLREPQTPTNVIIL----SEAEEESLVLNKGRAYTASLGETAVAFDFGPLAAVPKTLFGQNGKDEVVAYPLYILYENGETFLTYISLLHSPGNIGKLLGPLPMHPAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDHTSEKSWDSRIDLIP--SLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPL-PCRQPAPIRGFWIVPDILGPTMICITSTYECLIWPLL----STVH-PASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRSILQRSVANPAFLKASEKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKELQLIP---DQLRHLGNAIKQVTMKKDYQQQKMEKV-LSLPKPTIILSAYQRKCIQSILKEEGEHIREMVKQIN 733 The following BLAST results are available for this feature:
BLAST of TCONS_00050324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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