TCONS_00050340-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050340-protein
Unique NameTCONS_00050340-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050340-protein ID=TCONS_00050340-protein|Name=TCONS_00050340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MANRPKGFGMTAELNRKKEAKFDPDLANDAFEWLRLVLIDGGHDDMADVL
KHVSSSGDVAPPLKNGKILCTVINCIKPGTVRKINDSKMAFKEMENISKF
LTGCEELGCDKGDLFQTVDLYESQNPNQVINGIVALGRKSQTIGYDGPCL
GPQESTENKREFSEEQLKAGKNVIGLQMGSNKGASQAGQNFGKTRAIID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031872XLOC_031872Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050340TCONS_00050340Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001997Calponin/LIMCH1
IPR003096SM22_calponin
IPR001715CH-domain
IPR000557Calponin_repeat
Vocabulary: Biological Process
TermDefinition
GO:0031032actomyosin structure organization
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031032 actomyosin structure organization
molecular_function GO:0003779 actin binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001997Calponin/LIMCH1PRINTSPR00889CALPONINcoord: 70..87
score: 50.0
coord: 122..137
score: 39.38
coord: 191..199
score: 15.0
IPR003096Smooth muscle protein/calponinPRINTSPR00888SM22CALPONINcoord: 162..175
score: 57.56
coord: 175..190
score: 75.0
coord: 22..35
score: 25.63
coord: 108..123
score: 49.26
coord: 3..17
score: 33.73
coord: 92..108
score: 37.02
coord: 129..143
score: 30.59
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 26..136
e-value: 1.1E-10
score: 51.4
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 15..186
e-value: 2.7E-30
score: 104.5
IPR001715Calponin homology domainPFAMPF00307CHcoord: 57..141
e-value: 7.8E-15
score: 54.9
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 24..140
score: 12.886
IPR001715Calponin homology domainCDDcd00014CHcoord: 63..141
e-value: 2.19671E-15
score: 67.7211
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 17..184
IPR000557Calponin repeatPFAMPF00402Calponincoord: 174..197
e-value: 1.1E-10
score: 40.9
IPR000557Calponin repeatPROSITEPS01052CALPONIN_1coord: 174..192
IPR000557Calponin repeatPROSITEPS51122CALPONIN_2coord: 174..198
score: 11.438

Blast
[Close]
BLAST of TCONS_00050340-protein vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.190e-41
Identity = 84/206 (40.78%), Postives = 118/206 (57.28%), Query Frame = 0 
Query:    1 MANRPKGFGMTAELNRKKEAKFDPDLANDAFEWLRLVLIDGGHDDMADVLKHVSSSGDVAPPLKNGKILCTVINCIKPG---TVRKINDSKMAFKEMENISKFLTGCEELGCDKGDLFQTVDLYESQNPNQVINGIVALGRKSQTIG---YDG-PCLGPQESTENKREFSEEQLKAGKNVIGLQMGSNKGASQAGQN-FGKTRAII 198
            MANR   +G++ E+  K E K+D DL N   +W+ L   +       D+             L +G +LC +IN + P     + KI++SKMAFK+ME IS+FL   E  G    D+FQTVDL+E ++   V   ++ALG  + T     Y G P    +++ +N+R FSEEQL+ G+NVIGLQMGSNKGASQAG   +G  R I+
Sbjct:    1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAE-------DIEHPPPGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
BLAST of TCONS_00050340-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL31.190e-4140.78Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2[more]
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