|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050340 ID=TCONS_00050340|Name=TCONS_00050340|organism=Clytia hemisphaerica|type=transcript|length=1067bp
TTAATCTTCAACGATCTACAAGTATATAGAGAAACTTGTTATATGGAGCT
CATTGTATATCAAAACTGACACTACGGCAATTTAGAGAGATTTCTTTACA
CCCCTAAATATCACGTGTTATTTAAATTTGTGCTTTATTTTAGTGCTgta
taaaaaacaacaataaaaatggCTAACCGACCAAAAGGATTTGGAATGAC
CGCCGAATTGAATCGAAAAAAGGAAGCCAAATTCGACCCAGACCTGGCAA
ATGATGCTTTTGAATGGTTGAGATTGGTCTTAATAGATGGTGGTCATGAC
GATATGGCTGACGTTCTCAAACATGTTTCAAGCTCTGGGGATGTTGCACC
ACCATTGAAAAACGGAAAAATCCTTTGCACGGTCATCAACTGTATCAAGC
CTGGTACCGTCAGAAAGATCAATGACAGCAAAATGGCATTcaaagaaatg
gaaaatatAAGCAAATTCTTGACTGGTTGTGAGGAATTGGGATGTGACAA
AGGAGATCTTTTCCAAACTGTTGATTTGTACGAATCACAAAATCCGAACC
AGGTCATCAACGGCATAGTCGCTCTGGGTCGCAAATCCCAAACTATTGGC
TACGACGGGCCATGTCTAGGTCCCCAAGAGTCAACAGAAAACAAGCGAGA
ATTCAGTGAGGAACAACTAAAAGCCGGAAAAAACGTCATTGGACTTCAAA
TGGGATCCAACAAAGGTGCATCACAAGCTGGACAGAACTTCGGAAAAACC
CGTGCTATCATTGATTAAATTTTCATgtatattttcttcaattttgggTT
AACTCAGGtccaattcaaaatttaattattgtgaccttttttgttttaat
attaatgtgttttaaaagtagataaaataataaccaaaaaaatgttaatA
GGTATTTATGAGCGGAAAGAACCAAAGAATTGCATCAATTTGACATGAAA
GTAGAAGTTCTTATCTGaattttcagccccactggaagatTTGACCAGAA
TTTTGTGCTCAATGGGAAATATACCTTACGATTTCAGTccaactgaaaaa
taaaatttgatttcacC Run BLAST on NCBI protein sequence of TCONS_00050340-protein >TCONS_00050340-protein ID=TCONS_00050340-protein|Name=TCONS_00050340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MANRPKGFGMTAELNRKKEAKFDPDLANDAFEWLRLVLIDGGHDDMADVL
KHVSSSGDVAPPLKNGKILCTVINCIKPGTVRKINDSKMAFKEMENISKF
LTGCEELGCDKGDLFQTVDLYESQNPNQVINGIVALGRKSQTIGYDGPCL
GPQESTENKREFSEEQLKAGKNVIGLQMGSNKGASQAGQNFGKTRAIID Run BLAST on NCBI transcript from alignment at scaffold_169:148960..151470- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050340 ID=TCONS_00050340|Name=TCONS_00050340|organism=Clytia hemisphaerica|type=transcript|length=2511bp|location=Sequence derived from alignment at scaffold_169:148960..151470- (Clytia hemisphaerica)
TTAATCTTCAACGATCTACAAGTATATAGAGAAACTTGTTATATGGAGCT
CATTGTATATCAAAACTGACACTACGGCAATTTAGAGAGATTTCTTTACA
CCCCTAAATATCACGTGTTATTTAAATTTGTGCTTTATTTTAGTGCTGTA
TAAAAAACAACAATAAAAATGGCTAACCGACCAAAAGGATTTGGAATGAC
CGCCGAATTGAATCGAAAAAAGGAAGCCAAATTCGACCCAGACCTGGCAA
ATGATGCTTTTGAATGGTTGAGATTGGTCTTAATAGATGGTGGTCATGAC
GATATGGCTGACGTTCTCAAAGTAAGTTCTCTACAGTGTATGCAAAGAAA
TATTTATATATTACAATATTTTTGCTGTGTCCCGAAAACGGTAAAAAATC
ATTTCTGACTAAAGAAAGACTAAATTTGGAATTTTTTGTTTAGTTGGTAG
ACATCCTGCTCCCAAGATGACACAGCCAACTCTCGAATTGTAGGAAGCAA
TTTACAACGGTTTCCTTTTGACGGGAGCTGCGAATTACAGTAACTCGAAT
TATAGAGAGATTTAGAAAATAAGTCCTCCGTAACAAGTTTCCCTAATCCG
AAAAATCTGTTCCACTTTTTTGTAGGCGTACTGCGTATTTCCAAACTTTA
CTTATTTCTTTATTTAGCCCCTTGAATTTTTAAAAACACTTCCAATTTAT
AGCATGTTTCAAGCTCTGGGGATGTTGCACCACCATTGAAAAACGGAAAA
ATCCTTTGCACGGTCATCAACTGTATCAAGCCTGGTACCGTCAGAAAGAT
CAATGACAGCAAAATGGCATTCAAAGAAATGGAAAATATAAGCAAATTCT
TGACTGGTTGTGAGGAATTGGGATGTGACAAAGGAGATCTTTTCCAAACT
GTTGATTTGTACGAATCACAAAATCCGAACCAGGTAGGTGACGTTTTTTA
TAAGAGTAGTTGACCCTGGTAAATAATGAGAATTCTGGAGTATCGGCCAA
AATTGTTGAATTTTTTTCACAGACTTTAACTTTAAATTGACAATAAAAAA
ACACTAATCTTGAATAGGATTTTTATGCGACTCCAAGTATTCGACCAAGA
TCCAAATTTCGAAAATGTTTTTCTCCGGAGTATTTCAAACAAATAAAATT
AGCATTGTTTTTCAATAGGTCATCAACGGCATAGTCGCTCTGGGTCGCAA
ATCCCAAACTATTGGCTACGACGGGCCATGTCTAGGTCCCCAAGAGTCAA
CAGAAAACAAGCGAGAATTCAGTGAGGAACAACTAAAAGCCGGAAAAAAC
GTCATTGGACTTCAAATGGGATCCAACAAAGGTGCATCACAAGCTGGACA
GAACTTCGGAAAAACCCGTGCTATCATTGATTAAATTTTCATGTATATTT
TCTTCAATTTTGGGTTAACTCAGGTCCAATTCAAAATTTAATTATTGTGA
CCTTTTTTGTTTTAATATTAATGTGTTTTAAAAGTAGATAAAATAATAAC
CAAAAAAATGTTAATAGGTATTTATGAGCGGAAAGAACCAAAGAATTGCA
TCAATTTGACATGAAAGTAGAAGTTCTTATCTGAATTTTCAGCCCCACTG
GAAGATTTGACCAGAATTTTGTGCTCAANAATGACAGCAAAATGGCATTC
AAAGAAATGGAAAATATAAGCAAATTCTTGACTGGTTGTGAGGAATTGGG
ATGTGACAAAGGAGATCTTTTCCAAACTGTTGATTTGTACGAATCACAAA
ATCCGAACCAGGTAGGTGACGTTTTTTATAAGAGTAGTTGACCCTGGTAA
ATAATGAGAATTCTGGAGTATCGGCCAAAATTGTTGAATTTTTTTCACAG
ACTTTAACTTTAAATTGACAATAAAAAAACACTAATCTTGAATAGGATTT
TTATGCGACTCCAAGTATTCGACCAAGATCCAAATTTCGAAAATGTTTTT
CTCCGGAGTATTTCAAACAAATAAAATTAGCATTGTTTTTCAATAGGTCA
TCAACGGCATAGTCGCTCTGGGTCGCAAATCCCAAACTATTGGCTACGAC
GGGCCATGTCTAGGTCCCCAAGAGTCAACAGAAAACAAGCGAGAATTCAG
TGAGGAACAACTAAAAGCCGGAAAAAACGTCATTGGACTTCAAATGGGAT
CCAACAAAGGTGCATCACAAGCTGGACAGAACTTCGGAAAAACCCGTGCT
ATCATTGATTAAATTTTCATGTATATTTTCTTCAATTTTGGGTTAACTCA
GGTCCAATTCAAAATTTAATTATTGTGACCTTTTTTGTTTTAATATTAAT
GTGTTTTAAAAGTAGATAAAATAATAACCAAAAAAATGTTAATAGGTATT
TATGAGCGGAAAGAACCAAAGAATTGCATCAATTTGACATGAAAGTAGAA
GTTCTTATCTGAATTTTCAGCCCCACTGGAAGATTTGACCAGAATTTTGT
GCTCAATGGGAAATATACCTTACGATTTCAGTCCAACTGAAAAATAAAAT
TTGATTTCACC Coding sequence (CDS) from alignment at scaffold_169:148960..151470- >TCONS_00050340 ID=TCONS_00050340|Name=TCONS_00050340|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_169:148960..151470- (Clytia hemisphaerica)
GTCATCAACGGCATAGTCGCTCTGGGTCGCAAATCCCAAACTATTGGCTA
CGACGGGCCATGTCTAGGTCCCCAAGAGTCAACAGAAAACAAGCGAGAAT
TCAGTGAGGAACAACTAAAAGCCGGAAAAAACGTCATTGGACTTCAAATG
GGATCCAACAAAGGTGCATCACAAGCTGGACAGAACTTCGGAAAAACCCG
TGCTATCATTGATTAACATGTTTCAAGCTCTGGGGATGTTGCACCACCAT
TGAAAAACGGAAAAATCCTTTGCACGGTCATCAACTGTATCAAGCCTGGT
ACCGTCAGAAAGATCAATGACAGCAAAATGGCATTCAAAGAAATGGAAAA
TATAAGCAAATTCTTGACTGGTTGTGAGGAATTGGGATGTGACAAAGGAG
ATCTTTTCCAAACTGTTGATTTGTACGAATCACAAAATCCGAACCAGATG
GCTAACCGACCAAAAGGATTTGGAATGACCGCCGAATTGAATCGAAAAAA
GGAAGCCAAATTCGACCCAGACCTGGCAAATGATGCTTTTGAATGGTTGA
GATTGGTCTTAATAGATGGTGGTCATGACGATATGGCTGACGTTCTCAAA
GTCATCAACGGCATAGTCGCTCTGGGTCGCAAATCCCAAACTATTGGCTA
CGACGGGCCATGTCTAGGTCCCCAAGAGTCAACAGAAAACAAGCGAGAAT
TCAGTGAGGAACAACTAAAAGCCGGAAAAAACGTCATTGGACTTCAAATG
GGATCCAACAAAGGTGCATCACAAGCTGGACAGAACTTCGGAAAAACCCG
TGCTATCATTGATTAACATGTTTCAAGCTCTGGGGATGTTGCACCACCAT
TGAAAAACGGAAAAATCCTTTGCACGGTCATCAACTGTATCAAGCCTGGT
ACCGTCAGAAAGATCAATGACAGCAAAATGGCATTCAAAGAAATGGAAAA
TATAAGCAAATTCTTGACTGGTTGTGAGGAATTGGGATGTGACAAAGGAG
ATCTTTTCCAAACTGTTGATTTGTACGAATCACAAAATCCGAACCAGATG
GCTAACCGACCAAAAGGATTTGGAATGACCGCCGAATTGAATCGAAAAAA
GGAAGCCAAATTCGACCCAGACCTGGCAAATGATGCTTTTGAATGGTTGA
GATTGGTCTTAATAGATGGTGGTCATGACGATATGGCTGACGTTCTCAAA
GTCATCAACGGCATAGTCGCTCTGGGTCGCAAATCCCAAACTATTGGCTA
CGACGGGCCATGTCTAGGTCCCCAAGAGTCAACAGAAAACAAGCGAGAAT
TCAGTGAGGAACAACTAAAAGCCGGAAAAAACGTCATTGGACTTCAAATG
GGATCCAACAAAGGTGCATCACAAGCTGGACAGAACTTCGGAAAAACCCG
TGCTATCATTGATTAACATGTTTCAAGCTCTGGGGATGTTGCACCACCAT
TGAAAAACGGAAAAATCCTTTGCACGGTCATCAACTGTATCAAGCCTGGT
ACCGTCAGAAAGATCAATGACAGCAAAATGGCATTCAAAGAAATGGAAAA
TATAAGCAAATTCTTGACTGGTTGTGAGGAATTGGGATGTGACAAAGGAG
ATCTTTTCCAAACTGTTGATTTGTACGAATCACAAAATCCGAACCAGATG
GCTAACCGACCAAAAGGATTTGGAATGACCGCCGAATTGAATCGAAAAAA
GGAAGCCAAATTCGACCCAGACCTGGCAAATGATGCTTTTGAATGGTTGA
GATTGGTCTTAATAGATGGTGGTCATGACGATATGGCTGACGTTCTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050340-exon-scaffold_169-1575043694:151150..151470 | TCONS_00050340-exon-scaffold_169-1575043694:151150..151470 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1575043694:150538..150768 | TCONS_00050340-exon-scaffold_169-1575043694:150538..150768 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1575043694:148960..149474 | TCONS_00050340-exon-scaffold_169-1575043694:148960..149474 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1510915933:151150..151470 | TCONS_00050340-exon-scaffold_169-1510915933:151150..151470 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1510915933:150538..150768 | TCONS_00050340-exon-scaffold_169-1510915933:150538..150768 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1510915933:148960..149474 | TCONS_00050340-exon-scaffold_169-1510915933:148960..149474 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1491911889:151150..151470 | TCONS_00050340-exon-scaffold_169-1491911889:151150..151470 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1491911889:150538..150768 | TCONS_00050340-exon-scaffold_169-1491911889:150538..150768 | Clytia hemisphaerica | exon |
| TCONS_00050340-exon-scaffold_169-1491911889:148960..149474 | TCONS_00050340-exon-scaffold_169-1491911889:148960..149474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:148960..151470 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031032 | actomyosin structure organization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003779 | actin binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0031032 |
actomyosin structure organization |
| molecular_function |
GO:0003779 |
actin binding |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00050340 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 1.040e-38 Identity = 84/206 (40.78%), Postives = 118/206 (57.28%), Query Frame = 1
Query: 169 MANRPKGFGMTAELNRKKEAKFDPDLANDAFEWLRLVLIDGGHDDMADVLKHVSSSGDVAPPLKNGKILCTVINCIKPG---TVRKINDSKMAFKEMENISKFLTGCEELGCDKGDLFQTVDLYESQNPNQVINGIVALGRKSQTIG---YDG-PCLGPQESTENKREFSEEQLKAGKNVIGLQMGSNKGASQAGQN-FGKTRAII 762
MANR +G++ E+ K E K+D DL N +W+ L + D+ L +G +LC +IN + P + KI++SKMAFK+ME IS+FL E G D+FQTVDL+E ++ V ++ALG + T Y G P +++ +N+R FSEEQL+ G+NVIGLQMGSNKGASQAG +G R I+
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAE-------DIEHPPPGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
|
