TCONS_00050365-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050365-protein
Unique NameTCONS_00050365-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length184

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050365-protein ID=TCONS_00050365-protein|Name=TCONS_00050365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MNDFQDFGDIQNCYKIMVIGESGVGKSSLIRRLLLGSFSSCTSTTVGVDR
KITRFNLGDGEETVQLQLLDAAGSYKFKGILKSYMSSIDAIVFMYDISKK
ETFACLPMWTNLLNGANTKRNLTKVLVGNKLDLPREVKTKNAVNYGDFEG
MIPMETSVKNGESVDLVFKRIVAELKMRKQFPTI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031892XLOC_031892Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050365TCONS_00050365Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR025662Sigma_54_int_dom_ATP-bd_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 37..53
score: 24.49
coord: 120..133
score: 50.42
coord: 153..175
score: 30.16
coord: 14..35
score: 42.26
coord: 57..79
score: 27.84
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 14..178
e-value: 1.7E-26
score: 104.0
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 16..177
e-value: 0.0011
score: -69.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 11..178
e-value: 2.2E-9
score: 18.9
NoneNo IPR availableGENE3D3.40.50.300coord: 81..176
e-value: 2.4E-18
score: 65.4
NoneNo IPR availableGENE3D3.30.70.1390coord: 12..80
e-value: 3.1E-17
score: 61.8
NoneNo IPR availablePROSITEPS51419RABcoord: 9..184
score: 20.224
NoneNo IPR availableCDDcd00154Rabcoord: 14..172
e-value: 3.04972E-41
score: 137.202
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 12..171
e-value: 7.1E-19
score: 66.1
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 15..175
e-value: 1.6E-32
score: 112.2
IPR025662Sigma-54 interaction domain, ATP-binding site 1PROSITEPS00675SIGMA54_INTERACT_1coord: 16..29
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..179

Blast
[Close]
BLAST of TCONS_00050365-protein vs. Swiss-Prot (Human)
Match: RAB30 (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.641e-30
Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 0 
Query:   14 YKIMVIGESGVGKSSLIRRLLLGSFSSCTSTTVGVDRKITRFNLGDGEETVQLQLLDAAGSYKFKGILKSYMSSIDAIVFMYDISKKETFACLPMWTNLLNGANTKRNLTKVLVGNKLDLP--REVKTKNAVNYGDFEGMIPMETSVKNGESVDLVFKRIVAEL 175
            +KI++IG +GVGK+ L+RR   G F      T+GVD  I    +    E V+LQ+ D AG  +F+ I +SY  S +A++  YDI+ +E+F CLP W   +    + + +T VLVGNK+DL   REV  + A  + + + M  +ETS K  ++V+ +F  +   L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING--EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT-VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170
The following BLAST results are available for this feature:
BLAST of TCONS_00050365-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB301.641e-3037.20Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
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