TCONS_00050531-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050531-protein
Unique NameTCONS_00050531-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length146

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050531-protein ID=TCONS_00050531-protein|Name=TCONS_00050531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MYRFLVIIAFCLVPPLKSQETNINFDGKRYVLVRSLATWSDAESDCNSKG
GHLASIQSTQEANHFNDIAKNRVIWLGAKRSSSGDWNWADDTLWSFTHWN
GGEPSNDGGNENCLATSGGSTAVWNDLDCELPLPYLCELGNNYGDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032001XLOC_032001Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050531TCONS_00050531Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 19..138
e-value: 3.6E-25
score: 99.6
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 37..138
e-value: 1.9E-18
score: 67.1
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 25..138
score: 22.298
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 14..140
e-value: 5.5E-32
score: 110.2
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 113..137
NoneNo IPR availableCDDcd00037CLECTcoord: 28..138
e-value: 4.2932E-25
score: 92.6829
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 22..140

Blast
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BLAST of TCONS_00050531-protein vs. Swiss-Prot (Human)
Match: NCAN (Neurocan core protein OS=Homo sapiens GN=NCAN PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.692e-17
Identity = 39/118 (33.05%), Postives = 54/118 (45.76%), Query Frame = 0 
Query:   25 FDGKRYVLVRSLATWSDAESDCNSKGGHLASIQSTQEANHFNDIAKNRVIWLGAK-RSSSGDWNWADDTLWSFTHWNGGEPSN-DGGNENCLATSGGSTAVWNDLDCELPLPYLCELG 140
            F G  Y        W DAE DC  + GHL S+ S +E +  N        W+G   R    D+ W D+T   F +W   +P N   G E+C+      +  WND+ C   LPY+C+ G
Sbjct: 1095 FQGHCYRYFAHRRAWEDAEKDCRRRSGHLTSVHSPEEHSFINSFGHENT-WIGLNDRIVERDFQWTDNTGLQFENWRENQPDNFFAGGEDCVVMVAHESGRWNDVPCNYNLPYVCKKG 1211
The following BLAST results are available for this feature:
BLAST of TCONS_00050531-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCAN5.692e-1733.05Neurocan core protein OS=Homo sapiens GN=NCAN PE=1... [more]
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