TCONS_00050603-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050603-protein
Unique NameTCONS_00050603-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1949

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050603-protein ID=TCONS_00050603-protein|Name=TCONS_00050603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1949bp
MDGQFEAFKVFNLSVSAVNVIGEGPANYFCIATPSIKNDPPSITMEDISD
ISNKTATLNFTLHLPYANEHQPTHLYFFRIESIDWSDTPHRRTYELTHTE
ATTKRIQEKMAGLMDCDYTSWPQTTAYPISDTISLHYNTNYQINTVACDA
LDSCPNTPGTFYFKTVEHVPTCPPANIQLTATGDTSIRVTFTALDFFCLH
ADATSYNFLLFETDKYLALENPSNMTANELELLADFKGEALPDQTEYEFE
GLHEYWNYSVIGFAVNNVGYGWISDPVSAVTHQDVPHGEPSNCTLISPNA
TALTVNFTLPHILHQNGIITKYRITIQEFPPSTDGLQDSLELDNTQEWIS
HSFHPLISYTIYNVTVRAYTMIGEGEEMCHLSCRVIEAEPTVAPEGEIMG
FTNDSVTIEFDDIPEQYKFGQLFYYNVSIRGQLHDRETHHVNTLHNVTEK
GLGTQRDYTFTSDNVLYPFTNYEIFVAACTRVGCGPDLVLPFLTKEMAPN
GVVNNLLAESTATTITIQWEAIESLSRRGNVTYYVVEMFRHSHQWEEVIM
NEGRWYYFDTPELTFTLDPMPNDTLFDIRVLGVTKEGQGPVCELVRIRTK
ENVPSVYPLEADGQETSSSSLLIKWDAVPREYHQGNLLGYIIKYQYVEVE
GFSFRGGSLNGTVQTQGMDVTEVEIQGLHLYTNYTIQVAGYTITGEGPWS
PTIVVSTGIFYDGNLTEWTQWGNCDKSCGLGVSMRQRWCTNPPPLYGGYD
CVGETMETLPCNDIPCPGFYLAKVGQSCADLCSEVGNDFACIRLLNTYDR
IQPFFEAIDADDYTQLSDIDCTSHPQTDDYQKASDPSYEISANRCRGYKN
LTLIDCHAVGGSQDRRLCKCVDKDSASYTEWANWGVCSKECGGGRYQRYR
RCLMSSCPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTR
KCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCS
NSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPCKSVDVNYYVRLV
DEHWDFMMYRMDDPNTLLLMDNLRSNISLVFQNNTDYGEIDNQVGVTFHN
FEKGSVLANFTVSFQMVHYAESLILQDAIDNNGILAEMPVELKNITTEDV
PSQPPNNIVCKSYTSTTINVTWDHSFKTNQSGYVEEHYLYYIFIRNIDDD
SLWDNEGTPDNSTQIIGLKPGTLYGIRVLVSSTAGMGLASKEIEVRTVAG
APTVSPYPCEMQTLDSYTIFFSWTAIPQSKVPGRFLGYQIKYKQYTKNDT
TIVNVDAQSEQRTINAFKAFTWYWVEITGYSNGGIGPPCLPFVFRTPEGA
PGAPPPNALVNDQFSTHQLNISWSALPPEYHNGDLVGYRFFYFMVRQAGV
ELAGRQTKILIDVDKFTMSYLIGGLESYTEYEIHLYAYSRYGDGPPIVLK
GSTCKCPKAIFTNYYNSNPFMQADQIRQTYTGLFPQLLSQIVDSVCTGCA
TPTTTYYNLSMDGREPLKDDVNSAIANIDDTTHFTFPIFGQLFIKTYSGY
PFVGIVQSQGTAMIVHQPKIVSVGFMRIFTAVVNAKSVLAISMLLMCVVG
WFLWFSEQSSSNSDMTIQDALQGASEGFWIAFVTMTTVGYGDFVPTTELS
KVVLAVWSLTGLVLIGIFGGVVSSGLSVVALNDDIKIYGSTVATIKDSFE
YRKAIQLFGKIDPNKNYTGILDIMAAVESGEVQIGLIDASFALGYEALME
EKSLRIYKVLDYNAGYGMVLAGDAAKLESDVRSYTTSNQAYISRFMEKEV
GLLQPTLIEVEELLFTPEEANFTFITLTGVFFALVFVGYLYWFFCRKTKI
QVQPEETSSTRLAKMTSLAKFSENFCTKFEASIEEMSSKNQKELIELNFL
HQNYKRLMNRLDLYKQHEEFEKKSKKKLARAIRKKQFDRIIESTYDKNN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032053XLOC_032053Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050603TCONS_00050603Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR003961FN3_dom
IPR013099K_chnl_dom
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1897..1917
NoneNo IPR availableGENE3D1.10.287.70coord: 1572..1764
e-value: 3.3E-18
score: 65.1
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1587..1674
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 986..1039
e-value: 0.42
score: 12.7
coord: 878..923
e-value: 7.0E-8
score: 42.2
coord: 928..981
e-value: 1.1E-11
score: 54.8
coord: 715..767
e-value: 6.8E-13
score: 58.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 924..980
e-value: 6.7E-12
score: 45.0
coord: 711..766
e-value: 6.4E-15
score: 54.7
coord: 982..1038
e-value: 3.6E-8
score: 33.1
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 872..923
e-value: 1.2E-7
score: 31.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 880..922
e-value: 4.0E-5
score: 23.6
coord: 930..980
e-value: 3.6E-8
score: 33.4
coord: 717..766
e-value: 1.5E-9
score: 37.8
coord: 987..1038
e-value: 0.03
score: 14.4
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 925..981
score: 12.571
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 712..767
score: 12.617
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 875..923
score: 10.813
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 983..1039
score: 8.816
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 979..1038
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 878..922
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 712..762
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 921..980
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1252..1336
e-value: 85.0
score: 3.4
coord: 1351..1444
e-value: 1.7E-6
score: 37.6
coord: 170..271
e-value: 2.9
score: 16.2
coord: 605..697
e-value: 7.4E-4
score: 28.8
coord: 1151..1237
e-value: 6.4E-8
score: 42.3
coord: 391..485
e-value: 6.0
score: 13.4
coord: 499..589
e-value: 0.027
score: 23.6
coord: 287..375
e-value: 0.018
score: 24.2
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 1354..1446
e-value: 2.5E-7
score: 30.9
coord: 614..700
e-value: 9.5E-8
score: 32.2
coord: 289..377
e-value: 7.1E-7
score: 29.4
coord: 1263..1338
e-value: 5.5E-6
score: 26.5
coord: 1154..1238
e-value: 3.7E-6
score: 27.1
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 289..391
score: 14.178
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1154..1250
score: 15.677
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 173..284
score: 11.361
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 393..497
score: 7.125
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1355..1459
score: 13.184
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 605..710
score: 14.604
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1255..1349
score: 14.612
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 498..602
score: 13.965
IPR003961Fibronectin type IIICDDcd00063FN3coord: 288..376
e-value: 3.43622E-5
score: 43.2539
IPR003961Fibronectin type IIICDDcd00063FN3coord: 173..281
e-value: 7.19799E-4
score: 39.0167
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1365..1446
e-value: 2.364E-7
score: 49.8023
IPR003961Fibronectin type IIICDDcd00063FN3coord: 402..486
e-value: 0.0032499
score: 37.0907
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1264..1346
e-value: 2.38641E-5
score: 43.6391
IPR003961Fibronectin type IIICDDcd00063FN3coord: 509..599
e-value: 5.17446E-6
score: 45.5651
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1154..1247
e-value: 1.19874E-8
score: 53.6543
IPR003961Fibronectin type IIICDDcd00063FN3coord: 615..707
e-value: 2.72302E-11
score: 61.7435
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 383..486
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 499..707
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1342..1447
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 173..379
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1149..1351
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 1622..1673
e-value: 1.1E-10
score: 41.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 491..597
e-value: 1.4E-11
score: 44.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1246..1346
e-value: 4.8E-12
score: 45.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 80..215
e-value: 1.3E-4
score: 21.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1137..1245
e-value: 1.5E-14
score: 53.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 219..287
e-value: 2.0E-5
score: 24.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1347..1453
e-value: 9.8E-12
score: 44.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 598..708
e-value: 5.7E-15
score: 55.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 388..488
e-value: 2.4E-6
score: 27.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 288..387
e-value: 3.7E-11
score: 42.5

Blast
[Close]
BLAST of TCONS_00050603-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 3.239e-40
Identity = 99/334 (29.64%), Postives = 138/334 (41.32%), Query Frame = 0 
Query:  712 DGNLTEWTQWGNCDKSCGLGVSMRQRWCTNPPPLYGGYDCVGETMETLPCNDIPCPGFYLAKVGQSCADLCSEVGNDFACIRLLNTYDRIQPFFEAIDADDYTQLSDIDCTSHPQTDDYQKASDPSYEISANRCRGYKNLTLIDCHAVGGSQDRRLCKCVDKDSASYTEWANWGVCSKECGGGRYQRYRRCL-------MSSCPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPC 1038
            DG+ +EW+ W  C +SCG G   R R C NP   +GG  C G  +E + CN  PCP  + A         CSE     +C +   T  R+                                ++P      + C G +    + C       + R C    K    +  WA+W  CS  CGGG  QR R C           C GS++  + CN +PCP  G+W  W+ W  C+ TC+ G+  R R CD+P    GG+ C G  +  +  CN   CP+ G W +W    QC   C       ++R CD P P  GG  C G+ T+   C+   C
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP-VHGAWSAWQPWGTCSE-----SCGKGTQTRARL-------------------------------CNNPPPAFGGSYCDGAETQMQV-C-------NERNCPIHGK----WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGG-PDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKT-RKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 2 Score: 160.614 bits (405), Expect = 5.366e-39
Identity = 99/333 (29.73%), Postives = 134/333 (40.24%), Query Frame = 0 
Query:  713 GNLTEWTQWGNCDKSCGLGVSMRQRWCTNPPPLYGGYDCVGETMETLPCNDIPCPGFYLAKVGQSCADLCSEVGNDFACIRLLNTYDRIQPFFEAIDADDYTQLSDIDCTSHPQTDDYQKASDPSYEISANRCRGYKNLTLIDCHAVGGSQDRRLCKCVDKDSASYTEWANWGVCSKECGGGRYQRYRRCLM-------SSCPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPC 1038
            G  ++W+ W  C  +CG G+  R R C  P P  GG  C G  +E   C + PCP                 V   ++   L     R                    C    QT   +  ++PS +     C G   + +I C+        R C        +++ W  WG CS+ CG G   R R C         S C G+   +  CN   CP+ G W  W  WS C+ +C  G R RTR C  PV  YGG++C G +  S   CN  PCP HG+WS W     C + C N     + R CD P P  GG  C G D++   C++  C
Sbjct: 4530 GGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP-----------------VDGSWSEWSLWEECTR-------------------SCGRGNQTRT-RTCNNPSVQHGGRPCEG-NAVEIIMCNI-------RPCPV----HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQS-DFCNSDPCPTHGNWSPWSGWGTCSRTC-NGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 3 Score: 134.806 bits (338), Expect = 3.953e-31
Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 0 
Query:  876 ASYTEWANWGVCSKECGGGRYQRYRRCLMSS-------CPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPCKS 1040
             S++EW+ W  C++ CG G   R R C   S       C G+ +++  CN+ PCPV G+W  W  W  C+ +C  G + R R C++P   +GG  C G  E  +  CN + CPIHG W+ W     C   C       + R C  P P+YGG  C G+D +   C+S PC +
Sbjct: 4587 GSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGA-ETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQ-RTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT 4756

HSP 4 Score: 97.0561 bits (240), Expect = 1.052e-19
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 0 
Query:  924 VDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPC 1038
            V G + QW+ W  C+ TC  G + R+R C+ P+   GGK C G + + +  C  +PCP+ G WS W L E+C + C    N  + R C+ P+ ++GG  C GN    I C+  PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLE-MRNCQNKPCPVDGSWSEWSLWEECTRSCGRG-NQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640
The following BLAST results are available for this feature:
BLAST of TCONS_00050603-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.239e-4029.64Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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