homeodomain transcription factor protein GSX (polypeptide) - C. hemisphaerica

Overview
Namehomeodomain transcription factor protein GSX
Unique NameTCONS_00050614-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050614-protein ID=TCONS_00050614-protein|Name=homeodomain transcription factor protein GSX|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MSRSFFIDTIIHEKEKLLRQTSPIKQQPIASSSPSSREPSPISEHGNQYQ
LSPISRYNQSPSPRSPPSPTGHQDYSRSSQNISSTSLHHGSALCGCCPPQ
PHSRLCMCSSCESGPREGEAAPFGSPREATHHTTRYLYGGSERGRIFSLA
SPINSRARPQFPALYVRDLDSRRLQLQQQVQHQRQQQLEEQQGGGSKSKR
IRTAYTSIQLLELEKEFQNNRYLSRLRRIQIAAMLDLTEKQVKIWFQNRR
VKWKKDKKSGFNNSYSPIGSPESPLYQTGELLH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032060XLOC_032060Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050614TCONS_00050614Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 166..186
NoneNo IPR availableGENE3D1.10.10.60coord: 166..260
e-value: 5.0E-27
score: 93.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..84
NoneNo IPR availableCDDcd00086homeodomaincoord: 199..257
e-value: 2.69958E-22
score: 86.5284
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 220..231
score: 45.07
coord: 235..245
score: 66.12
coord: 245..254
score: 79.06
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 198..260
e-value: 1.4E-27
score: 107.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 199..255
e-value: 6.5E-22
score: 77.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 196..256
score: 21.508
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 231..254
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 191..257

Blast
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BLAST of homeodomain transcription factor protein GSX vs. Swiss-Prot (Human)
Match: HXB3 (Homeobox protein Hox-B3 OS=Homo sapiens GN=HOXB3 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.653e-26
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 0 
Query:  194 GGSKSKRIRTAYTSIQLLELEKEFQNNRYLSRLRRIQIAAMLDLTEKQVKIWFQNRRVKWKKDKKS-GFNNSY---SPIGSPESPLYQTGELLH 283
            G + SKR RTAYTS QL+ELEKEF  NRYL R RR+++A +L+L+E+Q+KIWFQNRR+K+KKD+K+ G  +S    SP GSP  P+  T   ++
Sbjct:  184 GSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMN 277
The following BLAST results are available for this feature:
BLAST of homeodomain transcription factor protein GSX vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HXB31.653e-2655.32Homeobox protein Hox-B3 OS=Homo sapiens GN=HOXB3 P... [more]
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