TCONS_00050621-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050621-protein
Unique NameTCONS_00050621-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1154

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050621-protein ID=TCONS_00050621-protein|Name=TCONS_00050621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1154bp
PTITVEVICHNVTWHNDLLDDRNFKQQAISKIVIEALSDLYGTPLLPSSA
STFSLYESEKTKASVELHFRYFLGREPASILYESSQDHVFQMRHYTVLLS
TQTTKSTLPYNTRFNFEVTYTEDPKPSYVIQILDGPTLNHQYEKGYFIIA
RNEDLVENAFEEQVLVGSTEIFHLQSVYLCKVEVSFWVRRMTHFGFGPSS
SKVTFQGGESGNVYPTNITEFRQLNQSAISISWLKYPEDIMCAKFRLFRL
LIEESLNSSNIQTFEYVENANNTVVIDTLKPYTRYSLYLYAVNEVSKGTP
AIVNFRTNSSAPDFSPSLRNLTYNKETGTFEIEISPYPDDKEIYNDLDRP
NFFIDFRSPIDEQWTWFDLSATEINVINTTSFSLEYDDVGFVVYNVSLGA
TNQYGDASTEDYCYLSPQADMPIYSLVIESKDLSEENDQSPTIELTLAGN
ESAHENMFITKYAVSLQFESEGNDLLLEISHTNATIEYWNQADRLIECSN
VGPTPRVAKPVTKEMQLNRYYVNYTLTVMICKGNQCNLGSWDVPSTFQTP
AHKPMCMVENLEFEVVSSTSLKLRYDAILPECLNGELVHYEIYLFKMKYH
KKLLSKLFVDHPDDSWLRLNQSQQINTTDTEVVFENLNENRRYLTILRVV
NHVGYGNFSHILNSTTLEDAPSTAPEYEISVIGNVFAVIELWIPQKDQNG
IITAYRILFNDTDRTVTQPLDEEGVYHLSFEGLTPVTQYNLSISFLTEVG
EGPMVNISIMTTAGRPEVPPNEISSLPSNDSLIYTWGVPYLELIYGAALT
YNISHCGILRNGSQTCWFKQNQSIPAICEKVRDPHSIFTNCTLRVDGLLP
STFYTVNISHCGIEGCTNWTSFQSSTSEMAPSGQVPGVKVFGLTESINAS
WSLMEIMKRRGVIIAYNISARFITPLWWPVNESAVPQTLYFNSSTLSCLL
YGLQNDSLYNVSVTALTSVGSGPWSEPVQIRTLQNVPTAAPINVSADGIR
TEISVDWIPIDRFYHQGILLGYNISFQAREPFPDRGGRLQGYDLSFLPNI
SHVVYGLNPLTTYDIRVSGFTEIGSGLRSEAINATTDPFIDGNWTEWTQW
GNCEVSCGLGVSSRQRWCINPPPENGGARCVNGSKESRKCXSGHNGGIAK
SVVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032064XLOC_032064Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050621TCONS_00050621Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR000884TSP1_rpt
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 882..972
e-value: 0.17
score: 21.0
coord: 766..867
e-value: 59.0
score: 4.8
coord: 554..656
e-value: 13.0
score: 10.6
coord: 988..1076
e-value: 0.1
score: 21.7
coord: 212..298
e-value: 8.9
score: 11.9
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 880..985
score: 14.422
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 557..669
score: 12.379
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 671..765
score: 12.269
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 987..1089
score: 12.766
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 766..879
score: 6.028
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 214..313
score: 12.426
IPR003961Fibronectin type IIICDDcd00063FN3coord: 692..762
e-value: 2.76381E-4
score: 39.4019
IPR003961Fibronectin type IIICDDcd00063FN3coord: 883..982
e-value: 1.37932E-6
score: 46.7207
IPR003961Fibronectin type IIICDDcd00063FN3coord: 215..307
e-value: 9.92164E-5
score: 40.9427
IPR003961Fibronectin type IIICDDcd00063FN3coord: 990..1086
e-value: 5.7816E-6
score: 44.7947
IPR003961Fibronectin type IIICDDcd00063FN3coord: 558..666
e-value: 1.34198E-5
score: 43.6391
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 758..859
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 221..314
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 627..764
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 895..1087
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 1094..1144
e-value: 6.2E-8
score: 42.4
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 1096..1141
e-value: 1.3E-6
score: 28.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1091..1144
e-value: 8.0E-13
score: 48.0
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1091..1144
score: 11.459
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1090..1140
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 213..390
e-value: 9.1E-11
score: 41.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 687..764
e-value: 8.6E-9
score: 35.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 897..987
e-value: 8.1E-13
score: 48.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 988..1090
e-value: 1.3E-11
score: 43.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 542..675
e-value: 2.0E-14
score: 53.2
coord: 765..885
e-value: 3.9E-5
score: 23.3

Blast
[Close]
BLAST of TCONS_00050621-protein vs. Swiss-Prot (Human)
Match: PTPRD (Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.563e-22
Identity = 115/462 (24.89%), Postives = 190/462 (41.13%), Query Frame = 0 
Query:  649 VVNHVGYGNFSHILNSTTLEDAPSTAPEYEISVIGNVFAVIELWIPQKDQNGIITAYRILFN-DTDRTVTQPLDEEGVYH--LSFEGLTPVTQYNLSISFLTEVGEGPMV-NISIMTTAGRPEVPPNEISSLPSNDSLIYTWGVPYLELIYGAALTYNISHCGILRNGSQTCWFKQNQSIPAICEKVRDPHSIFTNCTLRVDGLLPSTFYTVNISHCGIEGCTNWTS-FQSSTSEMAPSGQVPGVKVFGLTE-SINASWSLMEIMKRRGVIIAYNISARFITPLWWPVNESAVP-QTLYFNSSTLSCLLYGLQNDSLYNVSVTALTSVGSGPWSEPVQIRTLQNVPTAAPINVSADGIR-TEISVDW-IPIDRFYHQGILLGYNISFQAREPFPDRGG------RLQGYDLSFLPNISH--VVYGLNPLTTYDIRVSGFTEIGSGLRSEAINATTDPFIDGN 1093
             VN++G G  S  + + T E APS+AP    + + +   ++  W   ++ NG I  YR+ +  D  + V   +          +   L P   Y++ +   T +G+GP+  +I ++T  G P  P N  +   S  S++ +W  P  + I    L Y     G            + Q I           +I    + R+ GL P++ Y   ++    +G    T+   + T +  PS     +     +  SI  SW    + K+ G+I  Y+I    +        E   P + L   S T   LL  L+  + Y ++VTA T VG GP S  V IRT ++VP+  P  V  + +  T + V W  P+    H G + GY + +   E    +G        L      F     H  ++ GL P T+Y + V+ +T  G G RS+    +T   + G 
Sbjct:  395 AVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHG------------EEQRI-----------TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPVEKQNGIITEYSIKYTAVD------GEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQH-GQIRGYQVHYVRMENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARSKPKLVSTTGAVPGK 826
The following BLAST results are available for this feature:
BLAST of TCONS_00050621-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRD1.563e-2224.89Receptor-type tyrosine-protein phosphatase delta O... [more]
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