TCONS_00050675-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050675-protein
Unique NameTCONS_00050675-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050675-protein ID=TCONS_00050675-protein|Name=TCONS_00050675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
NLTEIAPCCREAFAIYLINKVEENVRSPIARNRPAQILISSISNSSANKK
KKVQYNHLRKLLWDFAEDPQSSYPALVFYFLSCAIIILSIIVNCVETVNC
PTDYCLPVSGNLGANTTCNYSPKCGDLYSSIFFVLDTFCVVYFCIEYLIR
LYGAPNRINFIKSKMGLIDLLAIMPYFVDLAIRYYFTGLGAASKYVEMLR
SFRIVRIIKLVRHSERLKNLASAITSSISELGFILFMYSIVVIVFASTIF
YAEAAGRPPKESVFGSIPEAIWYTVVTTTTLGYGDVVPETIQGKLIGSLC
CLMGVIVIALPVPIIQMKSQTLVSGDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032104XLOC_032104Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050675TCONS_00050675Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003968K_chnl_volt-dep_Kv
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 206..214
score: 70.93
coord: 304..315
score: 73.61
coord: 230..244
score: 34.78
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 293..319
score: 53.84
coord: 160..180
score: 46.2
coord: 201..227
score: 41.2
coord: 69..97
score: 39.21
coord: 134..157
score: 35.65
coord: 264..286
score: 60.47
coord: 230..253
score: 40.42
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 77..320
e-value: 1.3E-34
score: 119.5
NoneNo IPR availableGENE3D1.20.120.350coord: 74..229
e-value: 6.1E-27
score: 93.5
NoneNo IPR availableGENE3D1.20.5.110coord: 285..316
e-value: 1.8E-10
score: 39.8
NoneNo IPR availableGENE3D1.10.287.70coord: 230..283
e-value: 3.4E-10
score: 39.4
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 72..318

Blast
[Close]
BLAST of TCONS_00050675-protein vs. Swiss-Prot (Human)
Match: KCND3 (Potassium voltage-gated channel subfamily D member 3 OS=Homo sapiens GN=KCND3 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 1.502e-69
Identity = 132/311 (42.44%), Postives = 182/311 (58.52%), Query Frame = 0 
Query:    5 IAPCCREAFAIYLINKVEENVRSPIARNRPAQILISSISNSSANKKKKVQYNHLRKLLWDFAEDPQSSYPALVFYFLSCAIIILSIIVNCVETVNCPTDYCLPVSGNLGANTTCNYSPKCGDLYSSIFFVLDTFCVVYFCIEYLIRLYGAPNRINFIKSKMGLIDLLAIMPYFVDLAIRYYFTGLGAASKYVEMLRSFRIVRIIKLVRHSERLKNLASAITSSISELGFILFMYSIVVIVFASTIFYAEAAGRPPKESVFGSIPEAIWYTVVTTTTLGYGDVVPETIQGKLIGSLCCLMGVIVIALPVPII 315
            I  CC E +     ++  EN          A+ L+    N S N ++ +     R+ +W   E+P +S  ALVFY+++   I +S+I N VETV C T   +P S  L           CG+ YS  FF LDT CV+ F +EYL+RL+ AP+R  FI+S M +ID++AIMPY++ L +    T     S     LR FR+ RI K  RHS+ L+ L   + S  SELGF+LF  ++ +I+FA+ +FYAE      K   F SIP + WYT+VT TTLGYGD+VP+TI GK+ GS+C L GV+VIALPVP+I
Sbjct:  128 IGDCCYEEYK----DRKREN----------AERLMDD--NDSENNQESMPSLSFRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGT---VPGSKEL----------PCGERYSVAFFCLDTACVMIFTVEYLLRLFAAPSRYRFIRSVMSIIDVVAIMPYYIGLVM----TNNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASK---FTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVI 402
The following BLAST results are available for this feature:
BLAST of TCONS_00050675-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCND31.502e-6942.44Potassium voltage-gated channel subfamily D member... [more]
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