TCONS_00051054-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00051054-protein
Unique Name	TCONS_00051054-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	457

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00051054-protein ID=TCONS_00051054-protein|Name=TCONS_00051054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MDLNATSSDGKELVVSNTQNVTGNTKFKQKVLEEEEYLSVLDKIVERDFY
PELSRMKLESEYLNALESDNVEELRKIQLLLDRSNMGELPNEEIISVDPE
AEDESTNNKESIQIDKKLSLDKFLAKNTSEDNASFEKIMEATRAKHKEKH
AWLFQQQMELHDRLDASKALPSSVEAQLLAIETKPNNLDTWKYEARNALM
YTPDGVELTAEEILNQKGKKEKQICHENTRFKEDPFNSNISRQAMLKASE
EQASMKKAVGKVGVDGKLENGTINGLDESANVRGYNFVGAPSPVPGVEAT
PLMTWGAIEGTPLRLDATPAPSFKIAEPRRREQLAHSLVEKASKQHREKR
KKAQAKAAHASFLSPKNSPSILASERLNRLTPAAQKLIKSSVRISTGDTS
LRASYSSPSPYIGGRATPKTPLGRLKTPSSRVKTPGSSRGNAEGSSITDN
LLNLPNI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032360	XLOC_032360	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00051054	TCONS_00051054	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019148	Nuclear_protein_DGCR14

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 398..457
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..367
IPR019148	Nuclear protein DGCR14	PFAM	PF09751	Es2	coord: 28..83 e-value: 1.6E-15 score: 57.7 coord: 100..387 e-value: 2.6E-58 score: 198.7

Blast

[Close]

BLAST of TCONS_00051054-protein vs. Swiss-Prot (Human)
Match: DGC14 (Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 6.739e-79
Identity = 176/470 (37.45%), Postives = 267/470 (56.81%), Query Frame = 0

Query:   23 GNTKFKQKVLEEEEYLSVLDKIVERDFYPELSRMKLESEYLNALESDNVEELRKIQLLLDRSNMGELPNEE--------------------IISVDPEAEDESTNNKESIQIDKKL---SLDKFLAKNTSEDNASFEKIMEATRAKHKEKHAWLFQQQMELHDRLDASKALPSSVEAQLLAIETKPNNLDTWKYEARNALMYTPDGVELTAEEILNQKGKKEKQICHENTRFKEDPFNSNISRQAMLKASEEQASMKKAVGKVGVDGKLENGTINGLDESANVRGYNFVGAPSPVPGVEATPLMTWGAIEGTPLR--------LDATPAPSFKIAEPRRREQLAHSLVEKASKQHREKRKKAQAKAA-HASFLSPKN-SPSILASERLNRLTPAAQKLIKSSVRISTGDTSLRASYSSPSPYIGGRATP-KTPLGRLKTPSSRVKTPGSSRGNA---EGSSITDNLLNLP 455
            G    KQ+VL+EEEY+  L  +++RDF+P++ +++ + EYL A E+ ++E +R+I +    S +G++  E                     ++   P        + E+ + ++K    SLD FL++ TSEDNASF++IME  + + + +HAWL+Q + E   R   +  LPS   A+  AIE+   +++TWKY+A+N+LMY P+GV    EE L    KK +Q+ H+NTRF  DPF+  +SR  + +A+   A  K+  GKVG DGK     I    ES  V G+ FV  PSP PGV  +P+MTWG +E TPLR        +D TP P+FKI EP RRE+L   +  +A+ ++R K+++A  +   + + L+PK  SP+         ++PA Q+L+  +    T D +LRASY +PSP    R+T  KTP   L+TP+S    PGS+       + +SITDNLL LP
Sbjct:   29 GAATSKQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFG-SALGKMSREPPPPYVTPATFETPEVHAGTGVVGNKPRPRGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKERSRARHAWLYQAEEEFEKRQKDNLELPS---AEHQAIESSQASVETWKYKAKNSLMYYPEGV--PDEEQLF---KKPRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQ--GKVGPDGK---ELIP--QESPRVGGFGFVATPSPAPGVNESPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEPGRRERLGLKMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPA---------MSPALQRLVSRTASKYT-DRALRASY-TPSP---ARSTHLKTPASGLQTPTS-TPAPGSATRTPLTQDPASITDNLLQLP 467

The following BLAST results are available for this feature:

BLAST of TCONS_00051054-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00051054-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DGC14	6.739e-79	37.45	Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1	[more]

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TCONS_00051054-protein (polypeptide) - C. hemisphaerica