TCONS_00051220-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00051220-protein
Unique Name	TCONS_00051220-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	484

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00051220-protein ID=TCONS_00051220-protein|Name=TCONS_00051220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MEVRFTSNNSIDSIGMANDDEILIQSSKEFTVHIYKYRWFILVLYSLTAF
SNTLVWLSLFTVTDATSIFYGVKEEYLIWSSASSTVIQCFIAIPFSFLPS
RLGLRTSMIIAAALNSVGACIMIAGAHRGGFAYFIAGQAIVAIAASILPQ
LAPEVSAVWFGKNEQAISTGIGVTVGNAGAAFGFLQPALFLKDVDPRTDI
DKLSMKIKQLIYVQAGLCVILTVIVFIFFKQRPAKPPSVSQAVRPGPGSL
NFQEFSRCCKEVLSNCQFHIIGNTFALMNMVTFVVPVVLNQIMGWKFPGK
DAMFGWMGFAGIVSGILGSVVFSLILDKTKAFKAMNVVIAFISVIMWVAF
VDLLKRVANLAVSMIVFIVALLLFIPMSPILVDTMAEITYPLPESIPFAV
AITGARLYSIPITFLAGYLVDQKKYYGVAHMFTGVLAFCLLLVIVMRVDR
KRTLAGLESNTVVDDELMVGGPIIIGDHDEEDDE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032468	XLOC_032468	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00051220	TCONS_00051220	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 41..384 e-value: 1.9E-19 score: 69.7
None	No IPR available	GENE3D	1.20.1250.20		coord: 256..462 e-value: 2.2E-9 score: 36.3
None	No IPR available	GENE3D	1.20.1250.20		coord: 31..245 e-value: 7.4E-18 score: 64.1
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 42..447 e-value: 3.72956E-10 score: 58.8645
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 33..452

Blast

[Close]

BLAST of TCONS_00051220-protein vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.332e-42
Identity = 109/440 (24.77%), Postives = 215/440 (48.86%), Query Frame = 0

Query:   32 VHIYKYRWFILVLYSLTAFSNTLVWLSLFTVTDATSIFYGVKEEYLIWSSASSTVIQCFIAIPFSFLPSRLGLRTSMIIAAALNSVGACIMIAGAHRGGFAYFIAGQAIVAIAASILPQLAPEVSAVWFGKNEQAISTGIGVTVGNAGAAFGFLQPALFLKDVDPRTDIDKLSMKIKQLIYVQAGLCVILTVIVFIFFKQRPAKPPSVSQAVR---PGPGSLNFQEFSRCCKEVLSNCQFHIIGNTFALMNMVTFVVPVVLNQIMGWKFPGKDAMFGWMGFAGIVSGILGSVVFSLILDKTKAFKAMNVVIAFISVIMWVAFVDLLKRVANLAVSMIVFIVALLLFIPMS---PILVDTMAEITYPLPESIPFAVAITGARLYSIPITFLAGYLVDQKKYYGVAHMFTGVLAFCLLLVI------VMRVDRKRTLAGLES 459
            + + + RW +++++S  +  N+  W+   ++ +    FYGV    + W S    +    + +P ++L  + GLRT  +  +ALN +GA + +       F   + GQ I ++A   +  +   +++VWFG NE + +  + V     G A GFL P + + +++ R   D+L+  I  + Y+  G+  +L ++V I FK++P  PPS +Q++      P +      +R  K    N  F ++  T+ L     + +  +LN+++ W +PG++   G +G   +++G+LG+V+  + LD++K +K   +V+  ++++  V +   L    NL    +VFI A  +   M+   P+  +   E+TYP  E I   +    A+++ I  T   G ++D    YG      G +  C+ L +       ++ D +R  A  E+
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDR---DELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFK----NLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTL----NLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDN---YGTK---PGNIFLCVFLTLGAALTAFIKADLRRQKANKET 500

The following BLAST results are available for this feature:

BLAST of TCONS_00051220-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00051220-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FLVC2	3.332e-42	24.77	Feline leukemia virus subgroup C receptor-related ...	[more]

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TCONS_00051220-protein (polypeptide) - C. hemisphaerica