TCONS_00051239-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051239-protein
Unique NameTCONS_00051239-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051239-protein ID=TCONS_00051239-protein|Name=TCONS_00051239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1183bp
MQPPMFNPMQAPRPGGPPTMQQPPTMQRPPSMQAPLAMQQPPMMKPPGTM
QQPPNFSNGFPPQHQNGVSPPSSMTSNPNQMNQINQQMGGMQLNQHVKPS
SGMAPPIGMAPPGGMTRPQQPGPPRPSGPPSMGALPNSFSPPPTNRPPSG
PSSLTGPSPPPSMGAPPGPVMGGPPKGMQAPPGQMSGAPSRPPGSGPPFA
GPPMTSQAGPPMTSQAGPPMTSQAGPTNQPRSNMMAGHPGPPGPQGNIGN
APGMPPTSMTQPGQPNQPPRLGQMNFMNSQPGMNSRQGMSGPPSGPPGTM
PPSSNQPPNMMAPPNQPGRMGPPSGPPGMGPGQPGMGGQPGGMMNRGGYP
APPMGSGQRPGPPGPGQPMGMTPGPMSGPMGGQQRKIDPNQMPNPIQVMS
EDQASFDNEIFQTSSRGKVPPLVSTKCRIQDDGNCSPRYMRSSVYSIPCN
QDMLKESGIPMAIVTTPFAKIPEDEHQLRYVDQGPTGPIRCNRCKAYMNP
FMQFIDGGRRFVCNICSHSSEVPAEYFCHLDHQGRRVDMYERPELCFGSY
EYIATADYCKDSKLPQPPAFIFMIDVSYQSMQQGMVRILSSELHKLLDEL
PKDIGMNESVIKVGFVTYSTQLHFYNVKANLAQPQMMVVADLEDSFVPLL
DGFLVDYREAKAVVDSLLEMLPEMFKDTRETDVVLGPVVAAGLEALKSAG
ISGKLYIFHSSLPITEAPGKLKNREDRKLLNTDKEKTILVPQGNYYMNMA
KECVNNGVSIDLFLFPNSYVDVATIGLMVTQTGGQVYRYSYFKENTHGQQ
FVNDLYKNFKREIGFDAIMRLRCSXYKNFKREIGFDAIMRLRCSTGLRPV
EFFGSFVMNNTTDVELATIDSDKAIVIEIKHDDKIPEDGVAYVQNALLYT
SASGQRRLRIHNLAFATCSQLADLYRCCELDTAVNYFTKYALRQVLSSNP
QSIRENLVQKCVQILACYRQHCATPSTSGQLILPECMKLLPLYMNCLIKS
DVLSGGSEISSDDRAFLMQACLSMPPSFTSSYLYPRVISLHTLDTDHDDD
TIPPQMRCLGEKFEESGVYLLENTISMFLWIGLHADQSFISQVFGVNSMG
QIDIEMTSLPALETPLSTRVREIIDSIQSERQRYLKLTIVRQRDKLEPWF
KHYIVEDKGFNAGQMSYVDFLCHVHKEIRNLLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032477XLOC_032477Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051239TCONS_00051239Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR006895Znf_Sec23_Sec24
IPR006896Sec23/24_trunk_dom
IPR029006ADF-H/Gelsolin-like_dom
IPR012990Sec23_24_beta_S
IPR006900Sec23/24_helical_dom
IPR007123Gelsolin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030127COPII vesicle coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0030127 COPII vesicle coat
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 567..798
e-value: 1.1E-77
score: 260.0
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 565..812
IPR006895Zinc finger, Sec23/Sec24-typePFAMPF04810zf-Sec23_Sec24coord: 488..526
e-value: 2.2E-17
score: 62.7
IPR006895Zinc finger, Sec23/Sec24-typeSUPERFAMILY82919Zn-finger domain of Sec23/24coord: 476..560
NoneNo IPR availableGENE3D2.30.30.380coord: 486..545
e-value: 2.1E-26
score: 91.3
NoneNo IPR availableGENE3D2.60.40.1670coord: 828..918
e-value: 1.5E-30
score: 105.5
NoneNo IPR availableGENE3D2.60.40.1670coord: 799..827
e-value: 0.0011
score: 18.6
NoneNo IPR availableCDDcd01479Sec24-likecoord: 565..813
e-value: 6.70469E-98
score: 311.9
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 833..928
coord: 313..473
IPR006896Sec23/Sec24, trunk domainPFAMPF04811Sec23_trunkcoord: 565..809
e-value: 3.2E-78
score: 262.6
IPR029006ADF-H/Gelsolin-like domainGENE3D3.40.20.10coord: 1035..1168
e-value: 1.6E-30
score: 105.2
IPR012990Sec23/Sec24 beta-sandwichPFAMPF08033Sec23_BScoord: 834..916
e-value: 1.1E-16
score: 61.2
IPR006900Sec23/Sec24, helical domainPFAMPF04815Sec23_helicalcoord: 930..1027
e-value: 6.8E-28
score: 96.4
IPR006900Sec23/Sec24, helical domainSUPERFAMILY81811Helical domain of Sec23/24coord: 930..1034
IPR007123Gelsolin-like domainPFAMPF00626Gelsolincoord: 1051..1122
e-value: 2.3E-6
score: 27.3
IPR007123Gelsolin-like domainSUPERFAMILY82754C-terminal, gelsolin-like domain of Sec23/24coord: 1035..1179

Blast
BLAST of TCONS_00051239-protein vs. Swiss-Prot (Human)
Match: SC24C (Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3)

HSP 1 Score: 950.658 bits (2456), Expect = 0.000e+0
Identity = 511/1062 (48.12%), Postives = 681/1062 (64.12%), Query Frame = 0
Query:  160 PPSMGAPPGPVMGGP---PKGMQAPPGQMSGAPS------RPPGSGPPFAGPPMTSQAGPPMTSQAGPPMTSQAGPTNQPRSNMMAGH--PGPP------GPQGNIGNAPGMPPTSMTQPGQPN-QPPRLGQMNFMNSQPGMNSRQGMSGPPSGPPGTMPPSSNQP--PNMMAPPNQPGRMGPPSGPPGMGPGQPGMGGQPGGMMNRGGYPAPPMGSGQRP-------GPPGPGQ-PMGMTPGPM-SGPMGGQQ---------RKIDPNQMPNPIQVMSEDQASFDNEIFQTSSRGKVPPLVSTKCRIQDDGNCSPRYMRSSVYSIPCNQDMLKESGIPMAIVTTPFAKIPEDEHQLRYVDQGPTGPIRCNRCKAYMNPFMQFIDGGRRFVCNICSHSSEVPAEYFCHLDHQGRRVDMYERPELCFGSYEYIATADYCKDSKLPQPPAFIFMIDVSYQSMQQGMVRILSSELHKLLDELPKDIGMNESVIKVGFVTYSTQLHFYNVKANLAQPQMMVVADLEDSFVPLLDGFLVDYREAKAVVDSLLEMLPEMFKDTRETDVVLGPVVAAGLEALKSAGISGKLYIFHSSLPITEAPGKLKNREDRKLLNTDKEKTILVPQGNYYMNMAKECVNNGVSIDLFLFPNSYVDVATIGLMVTQTGGQVYRYSYFKENTHGQQFVNDLYKNFKREIGFDAIMRLRCSXYKNFKREIGFDAIMRLRCSTGLRPVEFFGSFVMNNTTDVELATIDSDKAIVIEIKHDDKIPEDGVAYVQNALLYTSASGQRRLRIHNLAFATCSQLADLYRCCELDTAVNYFTKYALRQVLSSNPQSIRENLVQKCVQILACYRQHCATPSTSGQLILPECMKLLPLYMNCLIKSDVLSGGSEISSDDRAFLMQACLSMPPSFTSSYLYPRVISLHTLDTDHDDDTIPPQMRCLGEKFEESGVYLLENTISMFLWIGLHADQSFISQVFGVNSMGQIDIEMTSLPALETPLSTRVREIIDSIQSERQRYLKLTIVRQRDKLEPWFKHYIVEDKGFNAGQMSYVDFLCHVHKEIRNLLS 1183
            PPS GAPP      P       Q   G +   PS      R PGS P F  P       PP+    GPP TS A    Q     ++G   P PP      GP  ++ +A G  P S      P  Q P L Q       PG+ + Q     PS      PP+S  P  P+M  P       G PS         P     PG  M     P PPM S Q+P       G  GP + P     GP  + P  G Q         +++DP+ +P+PIQV+ +D+ +   E F T  RG+VPPLV+T   ++D GN SPRY+R + Y+IPC  DM K++ +P+A V  P A++P +E     VD G +GP+RCNRCKAYM PFMQFI+GGRRF C  CS  ++VP +YF HLDH G+RVD Y+RPEL  GSYE++AT DYCK++K P PPAFIFMIDVSY +++ G+VR+L  EL  LLD LP++ G  ES I+VGFVTY+  LHFYNVK++LAQPQMMVV+D+ D FVPLLDGFLV+  E++AV+ SLL+ +PEMF DTRET+ V  PV+ AG+EALK+A  +GKL++FH+SLPI EAPGKLKNR+DRKL+NTDKEKT+  PQ   Y  +AKECV  G  +DLFLFPN YVDVAT+ ++   TGG VY+Y+ F+     ++F++DL ++ ++ +GFD                    A+MR+R STG+R V+FFG+F M+NTTDVELA +D DK + +E KHDD++ E+  A +Q ALLYTS +GQRRLRIHNLA   C+QLADLYR CE DT +NY  K+A R VL+S  +++R+ L+ +C QILACYR++CA+PS++GQLILPECMKLLP+Y+NC++KSDVL  G+E+++DDRA++ Q   SM  + T+ + YPR++ L    +  +  T PP +R   E+     +YLLEN +++FLW+G    Q  +  +F V+S  QI   ++ LP L+ PLS +VR +IDS++++R RY+KLT+V+Q DK+E  FKH++VEDK  + G  SYVDFLCH+HKEIR LLS
Sbjct:   63 PPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPGSQP-FGSPLAPVGNQPPVLQPYGPPPTS-AQVATQLSGMQISGAVAPAPPSSGLGFGPPTSLASASGSFPNSGLYGSYPQGQAPPLSQAQ---GHPGIQTPQ--RSAPSQASSFTPPASGGPRLPSMTGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLGPLPPMHSPQQPGYQPQQNGSFGPARGPQSNYGGPYPAAPTFGSQPGPPQPLPPKRLDPDAIPSPIQVIEDDRNNRGTEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFD--------------------AVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPL--TKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGG-ASYVDFLCHMHKEIRQLLS 1094          
The following BLAST results are available for this feature:
BLAST of TCONS_00051239-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC24C0.000e+048.12Protein transport protein Sec24C OS=Homo sapiens G... [more]
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