TCONS_00051242-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051242-protein
Unique NameTCONS_00051242-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051242-protein ID=TCONS_00051242-protein|Name=TCONS_00051242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=909bp
MSNFVMVIRFEQNFLQEKIKIIKMSFFGGYNNYNGRGGGFPRPRHQNARF
GIAPLMRPNNQQRPRMGMSPRGGRPPFRGGNHGPNQHRFRSPGRDDSFRM
RGPRPPHNMSYNRTIKPDQQPPGNTEDFTKDVDMTEIIETKPAVDTITPN
ISKSEVTESKQPKSAEEPKKEEVSKVEVKEEIKQEDIKPTPKMELDRYNS
ELHVKLSQDNLVGEILKGDGFQYMWGGVRGTHGVKRGMVCYEVHILEYNK
VDLPNEKNPCVARVGWSVDGSDFQLGEDKLSWGYGGTGKSSVDSKFRDYG
KPFGAGDVITCYVDLNKVPKAIFFALNGEYLGVAFRFTNELGDKALYPHI
TVKNVTFRVNFGKEPPKYPLTNGFKMIGTLPEPDVVSPPPGPKLEKEAEV
IVMVGLPGSGKSYWCENYKREHPDKKYYILGTNXPPRSDVPAARPEQPPA
SRSDLPPRNQPSQYDREYPPPQAVDTTPYGRRPVDQPPQRDQPPPRDQPL
YERRDERYPADANRHYDDRPRDAYPPKEGDQYFDRPPQNRPEDAYRRPAE
AAAPYVENDRYGAQPPRREAYEGQQPPRDDYYGRREEFPPRRDEFPPRRE
EFPPRRDEFPVKREEGFPKREEAFPKREEGLPPRRDEIPPPRRDAVPSRH
GDPPKRRDDFPPKTDEYPPRRDEYPPRDDYRREDPPRPAYDERYDHRTPE
RRPYYEQDGQYPRRDEYDDRRAPPPHQARDAPPYGRNERDYQQSAPADDY
HRGRYPPSHEPRDYPHQADDRRYDQDSRYHQENSPKEGDSRHGDTNESYN
RMNRERSSYQTQMTTSTANYGHTTSTSESYLRNEAITSRDDRPKPPPRDE
ERFRGFDRERGPPPPAQPNPADRGTQSYEKQQEDYQKAYSQWYQNYAQAF
AALSQQDKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032479XLOC_032479Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051242TCONS_00051242Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR001870B30.2/SPRY
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003877SPRY domainSMARTSM00449SPRY_3coord: 236..365
e-value: 3.8E-22
score: 89.6
IPR003877SPRY domainPFAMPF00622SPRYcoord: 241..363
e-value: 8.1E-17
score: 61.4
NoneNo IPR availableGENE3D3.40.50.300coord: 399..906
e-value: 3.2E-4
score: 20.2
NoneNo IPR availableCDDcd12884SPRY_hnRNPcoord: 193..366
e-value: 8.48326E-85
score: 270.223
IPR001870B30.2/SPRY domainPROSITEPS50188B302_SPRYcoord: 172..366
score: 14.171
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 182..369

Blast
[Close]
BLAST of TCONS_00051242-protein vs. Swiss-Prot (Human)
Match: HNRL1 (Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.054e-58
Identity = 109/248 (43.95%), Postives = 151/248 (60.89%), Query Frame = 0 
Query:  193 MELDRYNSELHVKLSQDNLVGEILKGDGFQYMWGGVRGTHGVKRGMVCYEVHILEYNKVD-LPN-EKNPCVARVGWSVDGSDFQLGEDKLSWGYGGTGKSSVDSKFRDYGKPFGAGDVITCYVDL---NKVPKAIFFALNGEYLGVAFRFTNE-LGDKALYPHITVKNVTFRVNFGKEP-PKYPLTNGFKMIGTLPEPDVVSPPPGPKLEKEAEVIVMVGLPGSGKSYWCENYKREHPDKKYYILGTN 433
            + +D YN +LH K+++D   G  L  +GF Y+W G R ++GV+RG VC+E+ I E   V  LP+ E +P V R+GWS+D    QLGE+  S+GYGGTGK S +S+F +YG  F   DVI C+ D    N V   + F  NG+++G+AFR   E LG +ALYPH+ VKN     NFG+   P   +  GF  I  LP  + +    GPK + E E+++MVGLP +GK+ W   +   +P KKY ILGTN
Sbjct:  211 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVE--LSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTN 456
The following BLAST results are available for this feature:
BLAST of TCONS_00051242-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRL12.054e-5843.95Heterogeneous nuclear ribonucleoprotein U-like pro... [more]
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