TCONS_00051244-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051244-protein
Unique NameTCONS_00051244-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1065

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051244-protein ID=TCONS_00051244-protein|Name=TCONS_00051244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1065bp
FQVFEITHETRNNVLELQIYSAFWVLNKTGLDLQFKVRGENNIYTFPKDD
SSTPLMLLYRNRKKAKGNICLADSDDSWSEDFSLSAIGDENHVDIKDQHN
QPYTIHIENVMSRTNLTNIITLSPRCIISNHTQNDIQFAEADKPIADVQW
LSLAPNQSAPCWLHSPMSSVYLKEAESPFYGSPLPFTYDAKYAKRLSEKH
TVCVDINHLGERLIMNITKYEDGCIPLRIDNYCAMPIYVQQCGVSGLTNI
REHSRNTSQFFNWAEYNKDTEIQVMYGRPTALVKHLHVSMDDWGKHSLRY
ADEVDRIHGRRKKGSGFPCRACRCSCLPLSHCCSQNDDTDREASRRLMDQ
VDTSVSPEPDSIDVEDGAQHVYWISYLEGMQRVVAFSTDIDVIGLLMKSG
DLENLTMEAYLSLQGVGVSLLNKQPVEVAYVTLTGGTSCWEVQSKNGRWK
LLDVDISVLLEDAWKNNSKSVQYDKVQADLENMKMSKPMKGALRRSLDPA
VWVEYKQSKSNSSIYTKLHRIQVDDQQFDISFPSVLYPHPLPEKIIKRNG
IKPFFELCAVITHLHDVMIFKYFKLLMQEMNLKVDRPIITGLMSLMFTAQ
TTAHDYHKYYEEDIKMLKESVEESIEKILVTQSTKILMCYFHLSPIKIHL
SFSLEGNSTANEDYLFEWFISTIGIHFTDISDAVIKLAFYERKNVFLSQD
ILVTDVSKHYALQAIKQFYVLVLGLDALGNPYGLITEFGKGFKDLFYEPY
LGSVGGPREFGAGLASGIKSLLGHTIGGTAGAAALITEQLGQVVAALSFD
SEYKRKRRREMREDPSGLAAGLATGGKQFVMGLVFGVSGLVTKPYQGAKK
RGLEGFFKGIGRGLIGLFIKPTGGVIDLVTSSLDGVRRFAEQGGEDITVR
LRLPRLTHPHEPVTIYCSEKAFGYSILRALITAKNQIAGDFKDHQVIPTH
PNIVFIFTTKCIVQASQSKFFSEWNVEWKTSYDSLQRTDACGNVVTFTQK
GSDDGGAIEEAIEHSVNTGDPDNAQSLHEKAWNCLNEYNLLSPSPSDNRI
VIDPDDVDLTTYVVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032480XLOC_032480Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051244TCONS_00051244Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031645VPS13_C
IPR009543SHR-BD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 637..804
e-value: 2.0E-52
score: 177.4
IPR009543Vacuolar protein sorting-associated protein 13, SHR-binding domainPFAMPF06650SHR-BDcoord: 16..242
e-value: 5.4E-27
score: 94.8

Blast
BLAST of TCONS_00051244-protein vs. Swiss-Prot (Human)
Match: VP13A (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2)

HSP 1 Score: 402.905 bits (1034), Expect = 2.476e-118
Identity = 310/1026 (30.21%), Postives = 489/1026 (47.66%), Query Frame = 0
Query:    6 ITHETRNNVLELQIYSAFWVLNKTGLDLQFKVRGENNIYTFPKDDSSTPLMLLYR-NRKKAKGNICLADSDDSWSEDFSLSAIGDENHVDIKDQHNQPYTIHIENVMSRTNLTNIITLSPRCIISNHTQNDIQFAEADKPIADVQWLSLAPNQSAPCWLHSPMSSVYLK--EAESPFYGSPLPFTYDAKYAKRLSEKHTVCVDINHLGERLIMNITKYEDGCIPLRIDNYCAMPIYVQQCGVSGLTNIREHSRNTSQFFNWAEYNKDTEIQVMYGRPT-ALVKHLHVSMDDWGKHSLRYADE------------VDRIHGRRKKGSGFPCRACRCSCLPLSHCCSQNDDTDREASRRLMDQVDTSVSPEPDSIDVEDGAQHVYWISYLEGMQRVVAFSTDIDVIGLLMKSGDLENLTMEAYLSLQGVGVSLLN---KQPVEVAYVTLTGGTSCWEVQ-SKNGRWKLLDVDISVLLEDAWKNNSKS-------VQYD-----KVQADLENMKMSKPMKGALRRSLDPAVWVEYKQSKSNSSIYTKLHRIQVDDQQFDISFPSVLYPHPLPEKIIKRNGIKPFFELCAVITHLHDVMI--FKYFKLLMQEMNLKVDRPIITGLMSLMFTAQTTAHDYHKYYEEDIKMLKESVEESIEKILVTQSTKILMCYFHLSPIKIHLSFSLEGNSTANED----------YLFEWFISTIGIHFTDISDAVIKLAFYERKNVFLSQDILVTDVSKHYALQAIKQFYVLVLGLDALGNPYGLITEFGKGFKDLFYEPYLGSVGGPREFGAGLASGIKSLLGHTIGGTAGAAALITEQLGQVVAALSFDSEYKRKRRREMREDPSGLAAGLATGGKQFVMGLVFGVSGLVTKPYQGAKKRGLEGFFKGIGRGLIGLFIKPTGGVIDLVTSSLDGVRRFAEQGGEDITVRLRLPRLTHPHEPVTIYCSEKAFGYSILRALITAKNQIAGDFKDHQVIPTHPNIVFIFTTKCIVQASQSKFFSEWNVEWKTSYDSLQR 987
            +T+ T   V+    +S +W++NKTG  LQ+K  G   I+     +   P++  ++ N       + L  +D   S  FS+  +G    V  K      Y + +   +S  N+T I+T +P  +I N ++  I  AE      + +WLSL   Q  P W     S + ++   +E P                                +R+  N    ++ CI LR+DN           G+    N+ EHS   + F ++ +           G  T  L+ H    +  + + SL   ++             D +  RR K   + CR             +Q DD        +M  +D              G + +Y +S+ EG+QR++ F+ D  V  +  +S   E    E  ++LQ VG+SL+N   KQ  EVAY+ +T     WE +  K  RWK + V  +  LE  +K  ++S       +Q D     ++     NMK+ +P   ALRR+  PA+ VEY  S   SS   +++RIQ+ +Q     FP V YP   P+ +   +  KPF ++  V+       I   KYFK+L+QEM+L++D   I  L  LM  A+ T +   + + +DI+  KE  + +    LV QS   L  YFH+SPIK+HLS SL       +D          +     + +IG   TD+ D V KLAF+E    F +   L ++V +HY+ QAIKQ YVL+LGLD LGNP+GLI EF +G +  FYEPY G++ GP EF  G+A G+K+L+G  +GG AGAA+ IT  + + VAA++ D +Y++KRR  M + P+G   G+  GGK  V G V G++G+VTKP +GA+K G  GFFKG+G+GL+G   +PTGG+ID+ +S+  G++R  E    +    LR PR  +    +  Y      G  +L+ +   +N     +K    +  +   + + T + ++  ++   F +   EW+ S+D   +
Sbjct: 2200 MTYNTGQTVVAF--HSPYWMVNKTGRMLQYKADG---IHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSNQFSIDTVGSHGAVKCKGL-KMDYQVGVTIDLSSFNITRIVTFTPFYMIKNKSKYHISVAEE----GNDKWLSLDLEQCIPFWPEYASSKLLIQVERSEDP-------------------------------PKRIYFN---KQENCILLRLDNELG--------GIIAEVNLAEHSTVIT-FLDYHD-----------GAATFLLINHTKNELVQYNQSSLSEIEDSLPPGKAVFYTWADPVGSRRLK---WRCRKSHGEV-------TQKDD--------MMMPIDL-------------GEKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAEQEIAVALQDVGISLVNNYTKQ--EVAYIGITSSDVVWETKPKKKARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIALRRNYLPALKVEYNTSAHQSSFRIQIYRIQIQNQIHGAVFPFVFYPVKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFIYALTDLMTEAEVTENTEVELFHKDIEAFKEEYKTAS---LVDQSQVSLYEYFHISPIKLHLSVSLSSGREEAKDSKQNGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFHTTSDLQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVE---SLRPPRFFNEDGVIRPYRLRDGTGNQMLQVM---ENGRFAKYKYFTHVMINKTDMLMITRRGVLFVTKGT-FGQLTCEWQYSFDEFTK 3118          
The following BLAST results are available for this feature:
BLAST of TCONS_00051244-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP13A2.476e-11830.21Vacuolar protein sorting-associated protein 13A OS... [more]
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