TCONS_00051255-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051255-protein
Unique NameTCONS_00051255-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1342

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051255-protein ID=TCONS_00051255-protein|Name=TCONS_00051255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1342bp
CRAMAISEFESKKEDIAAEKSEVGGEPQGWLEWLGITGSGSETNITQDKE
GLDLFSDEESAFSLGKLSDTEKEELYKAIGYLEEKNHPTYSKSYVRAKLK
LTLDTCYINILKSEREKISFNLKKLIAIATERPGSDGLGLALQIEDVGAV
QSVHREEINIVEPHARNDPNLLVCDFQINPVDVKAYYAAQIKSQPLDVYF
HKKTVDILADVFTVEDDQKIMMEMQRAATETVAELRNASRAGIEYTIMNN
KALYLDFNMKSPTVIFPLKYADESNEEAVRIYFGDLVVKTELESELQEQL
LNEVTESDLEILFYHHTDITVSNIHMAVSRLEEGSRLRVNENTDEKNYII
PPIGFNLDVYRCLKQGYANFPDFRISGEIPSITINLTEDYIVYLYQLMTY
ITSQEVPIICNNIDLQSTTSISKNKTTSTISELTAIQDLLMQSAKPLKER
LQTHQNEETNHEVGYDTVDGGLPMGESNYDSAMSTFNRTKLDSTFTISQI
EVVYMMEDRKEFLFHINTIGCDVIMHMWDLNVNARVKYFDFVAAVSSNDL
IVQSITSEDLISFSLTQADASGPEFNTTFNQTELSSSVDCSGFNFYLQDK
SLTTLLKTIDKINRRLPTLEELDVPSKQPTKADLLANESMSLKKNVLGTI
IEYHDDDEEDLDDLDVEAKKSMTELERKVMDKIDFLLNFKLKKVNVILEA
NNKQLCQIIVEDLHSDVKTRSKSTEIDASLIKIKMIDKDPGTLYPEIFHE
ESENVIKAKIVMYNEIARLDLQPDMDVDITFCKMKIVCNLDFFCAIYKMI
LDITSPMNSKIIPEQSQIEKKKEVANTEFTKMSLKLSLDAPYIIYPLQCK
YQDHLLIDLGHLNLTNELKMTEDDILYDTMHVELTDVKIESALEDHCDFI
LAPFAMQSSISRSLNAELYSMDIGIILQEAKVRLVPIDVSFTVDLINALM
KSLLLFETVGLQGEEPPALQDYVFHLKAEIAKFIIEGFDSNDEENCLIRI
VSEAFNCDYHQYKDMTVKIGLQNISIIEERTKDSSGKIITVLTSESENEI
AHVNHLMKENGDQQLTVRFAKLNFCAHELAVSNTVDFIKDILERIYALDS
LQPVPEQVDGEGQPLSNKFELDCSLDELSIWWTLYRETFASVNMHGLNLV
LETTPTVTKVKTKLRNLSVLDLRQNCIYPKIMAMAVTDKNLLSCEFTMQV
ESDFTTYTVWLRMGRVEMVILYKFITEFMESMKPWLKLLAPTEDDDLTVR
KIPDIETTSITSSQRKPELQKEAPVVLIDLDIDITAPLVYVPESSTSKRC
IAFDLGRMVVSNNFTKSTDGNSDDLMGVDLIKANLKDVEVFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032482XLOC_032482Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051255TCONS_00051255Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031642VPS13_mid_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031642VPS13, repeated coiled regionPFAMPF16910VPS13_mid_rptcoord: 176..399
e-value: 4.8E-33
score: 114.5

Blast
BLAST of TCONS_00051255-protein vs. Swiss-Prot (Human)
Match: VP13C (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.868e-34
Identity = 204/943 (21.63%), Postives = 410/943 (43.48%), Query Frame = 0
Query:   67 LSDTEKEELYKAIGYLEEKNHPTYSKSYVRAKLKLTLDTCYINILKSEREKISFNLK-KLIAIATE---RPGSDGLGLALQIEDVGAVQSVHREEI--NIVEPHARNDPNLLVCDFQINPVDVKAYYAAQIKSQPLDVYFHKKTVDILADVFTVEDDQKIMMEMQRAAT-ETVAELRNASRAGIEYTIMNNKALYLDFNMKSPTVIFPLKYADESNEEAVRIYFGDLVVKTELESELQEQLLNEVTESDLEILF---YHHTDITVSNIHMAVSRLEEGSRLRVNENTDEKNYIIPPIGFNLDVYRCLKQGYANFPDFRISGEIPSITINLTEDYIVYLYQLMTYITSQEVPIICNNIDL-QSTTSISKNKTTSTISELTAIQDLLMQSAKPLKERLQTHQNEETNHEVGYDTVDGGLPMGESNYDSAMSTFNRTKLDSTFTISQIEVVYMMEDRKE---FLFHINTIGCDVIMHMWDLNVNARVK--YFDFVAAVSSNDLIVQSITSED-----LISFSLTQADASGPEFNTTFNQTELSSSVDCSGFNFYLQDKSLTTLLKTIDKINRRLPTLEELDVPSKQPTKADLLANESMSLKKNVLGTIIEYHDDDEEDLDDLDVEAKKSMTELERKVM-----DKIDFLLNFKLKKVNVILEANNKQLCQIIVEDLHSDVKTRSKSTEIDASLIKIKMIDKDPGTLYPEIFHEESENVIKAKIVMYNEIAR--LDLQPDM---DVDITFCKMKIVCNLDFFCA----IYKMILDITSPMNSKIIPEQS-----------QIEKKKEVANTEFTKMSLKLSLDAPYIIYPLQCKYQDHLLIDLGHLNLTNELKMTEDD-----ILYDTMHVELTDVKIESALED----HCDF-ILAPFAMQSSISRSLNAELYSMDIGIILQEAKVRLVPIDVSFTVDLINALMKSL 953
            ++  EK++L+ AIGY E  ++ T  K YV   + L L +  + I   E + I   LK ++I + T+   RPG+  L +  ++E    +  + +++I  ++V        +LL   F+ NP D  A     ++SQP++V +  KTV+ + + F  + ++ + +E   +AT   + E++  +  G+ + I   K L L  N+K   ++ P         + + + FG   + +      ++Q L + T S LE +    Y   D+ + N+ +  +R EE  + +         +I+ P+  ++++ + + +       F++SG +P + + +++  +            ++V  + N+I L Q +++ S  +  S+I  ++     L+ ++  L        +E  + E G       +   E    + +       L   F I ++ + +  + ++E    +F++  +G +  M  +DL V + +K    D+     S    +  I+S D     L+     +AD +GP F T F +TE +  V  S  N  LQ ++L   +  +  I           +PS          ++S+S+ K V                 +  E ++  + L + ++     D IDF L  KL    VI+      + +I ++ L S +  +S+   + A L  I + D DP T++            KA  +M NE+ R  LDL PD    D+     K+  V +L+  C     ++K ++ + + +N+    ++S                K++A   F ++S+ + L AP I+ P      + +++DLG + + N+  +  D+      + D M V+LT + +   +      H D  +L P  ++  ++R+L A  Y     + + E K  L  ++VS   + +N L + L
Sbjct:  500 MTPEEKDKLFTAIGYSESTHNLTLPKQYVAHIMTLKLVSTSVTI--RENKNIPEILKIQIIGLGTQVSQRPGAQALKVEAKLEH-WYITGLRQQDIVPSLVASIGDTTSSLLKIKFETNPEDSPADQTLIVQSQPVEVIYDAKTVNAVVEFF--QSNKGLDLEQITSATLMKLEEIKERTATGLTHIIETRKVLDLRINLKPSYLVVPQTGFHHEKSDLLILDFGTFQLNS------KDQGLQKTTNSSLEEIMDKAYDKFDVEIKNVQLLFARAEETWK-KCRFQHPSTMHILQPMDIHVELAKAMVEKDIRMARFKVSGGLPLMHVRISDQKM------------KDVLYLMNSIPLPQKSSAQSPERQVSSIPIISGGTKGLLGTSLLLDTVESESDDEYFDAEDGEPQTCKSMKGSELKKAAEVPNEELINLLLKFEIKEVILEFTKQQKEEDTILVFNVTQLGTEATMRTFDLTVVSYLKKISLDYHEIEGSKRKPLHLISSSDKPGLDLLKVEYIKADKNGPSFQTAFGKTEQTVKVAFSSLNLLLQTQALVASINYLTTI-----------IPSD---------DQSISVAKEV----------------QISTEKQQKNSTLPKAIVSSRDSDIIDFRLFAKLNAFCVIVCNEKNNIAEIKIQGLDSSLSLQSRKQSLFARLENIIVTDVDPKTVHK-----------KAVSIMGNEVFRFNLDLYPDATEGDLYTDMSKVDGVLSLNVGCIQIVYLHKFLMSLLNFLNNFQTAKESLSAATAQAAERAATSVKDLAQRSF-RVSINIDLKAPVIVIPQSSISTNAVVVDLGLIRVHNQFSLVSDEDYLNPPVIDRMDVQLTKLTLYRTVIQPGIYHPDIQLLHPINLEFLVNRNLAASWYHK---VPVVEIKGHLDSMNVSLNQEDLNLLFRIL 1367          
The following BLAST results are available for this feature:
BLAST of TCONS_00051255-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP13C2.868e-3421.63Vacuolar protein sorting-associated protein 13C OS... [more]
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