TCONS_00051293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051293-protein
Unique NameTCONS_00051293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051293-protein ID=TCONS_00051293-protein|Name=TCONS_00051293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGEMSSDTTTNDSLSTFF
SETGTGKRVPRAVFVDLEPAVIDEVRSGTYRSLFHPEQLITGKEDAANNY
ARGHYTVGKEYIDQTLDRVRKLSENCTGLQGFLIFHSFGGGTGSGFSSLL
MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHTDCAFM
VDNEAIYDICRKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLT
EFQTNLVPYPRIHFPMATYAPVISAEKAFHEQITVAEITNACFEPQNQMV
KCDPRHGKYMSCCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKI
GINYQPPCVVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYAKRA
FVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGMDSGDADEAEDDEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032509XLOC_032509Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051293TCONS_00051293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000217TubulinPRINTSPR01161TUBULINcoord: 175..188
score: 68.49
coord: 377..405
score: 56.47
coord: 105..129
score: 54.62
coord: 189..209
score: 59.43
coord: 131..149
score: 69.22
coord: 50..69
score: 65.55
coord: 150..171
score: 43.75
coord: 10..30
score: 69.11
coord: 92..103
score: 65.77
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 318..339
score: 86.9
coord: 42..55
score: 58.52
coord: 211..223
score: 78.09
coord: 85..98
score: 93.94
coord: 271..286
score: 74.58
coord: 344..357
score: 90.52
coord: 419..435
score: 84.03
coord: 18..33
score: 95.27
coord: 357..376
score: 85.88
coord: 117..125
score: 60.97
coord: 382..398
score: 79.34
coord: 145..157
score: 80.41
coord: 158..169
score: 82.49
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 46..243
e-value: 1.3E-76
score: 270.5
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..265
e-value: 3.8E-127
score: 422.7
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..210
e-value: 2.2E-67
score: 227.0
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..241
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 245..390
e-value: 1.1E-58
score: 210.9
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 260..388
e-value: 5.9E-51
score: 171.9
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 266..380
e-value: 1.6E-59
score: 198.5
NoneNo IPR availableGENE3D1.10.287.600coord: 381..432
e-value: 7.3E-31
score: 105.5
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..432
e-value: 0.0
score: 859.533
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 139..145
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 243..434

Blast
[Close]
BLAST of TCONS_00051293-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 402/450 (89.33%), Postives = 425/450 (94.44%), Query Frame = 0 
Query:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGEMSSDTTT---NDSLSTFFSETGTGKRVPRAVFVDLEPAVIDEVRSGTYRSLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRVRKLSENCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHTDCAFMVDNEAIYDICRKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLTEFQTNLVPYPRIHFPMATYAPVISAEKAFHEQITVAEITNACFEPQNQMVKCDPRHGKYMSCCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKIGINYQPPCVVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGMDSGDADEAEDDEY 447
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDG+M SD T    +DS +TFFSETG GK VPRAVFVDLEP VIDEVR+GTYR LFHPEQLITGKEDAANNYARGHYT+GKE ID  LDR+RKL++ CTGLQGFL+FHSFGGGTGSGF+SLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTLEH+DCAFMVDNEAIYDICR+NLDIERP+YTNLNRLISQIVSSITASLRFDG+LNVDLTEFQTNLVPYPRIHFP+ATYAPVISAEKA+HEQ+TVAEITNACFEP NQMVKCDPRHGKYM+CCLLYRGDVVPKDVNAAIA IKTKRTIQFVDWCPTGFK+GINYQPP VVPGGDLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS D  E E +EY
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADG-EDEGEEY 449
The following BLAST results are available for this feature:
BLAST of TCONS_00051293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+089.33Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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