TCONS_00051419-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051419-protein
Unique NameTCONS_00051419-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1067

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051419-protein ID=TCONS_00051419-protein|Name=TCONS_00051419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1067bp
MSSKEKGGHGKGNYEKSHRYSSERKNKPGNQDKRKQSSSEEEKAQKKNQK
KEEPVPKQSEEQLAKEQEELKRQAEEEEKERERQKLEDEKKAATEAKSSA
EERVKNRLKLRQENADIANNRPNEGFFKKLDSSMKKNTTFVKKLRTMTEQ
QRDSLINEFNGLNLSKFIQEAVTNLVDAKMKVSDVSAVAAMCSLFHQRYA
EFTPLFKKNFSKNFDGIDCKDEDKSGNVSKLRTSLRLLGELVLDGVYGLD
NGISLLKNFLQTIVSSDKTSFAYAAVILTIVRHCGEDIAGILPRKHRHWK
EELRIELPLLNVINPDQQSIFLCLFKEYYEALSKHIVVSHKTLQNRERQN
KQTIGLKGELPADRKEAFEKAQKTHEKLLTSLNSLSELLDEEMPDLPEDE
QNESEDMGTVNVFTPLKGVEYDSETGLWEDEDTRTFYEKLEDLKEKVPQI
LFKESTTSTSSALQKKRSEKKKHVDRKLRHDINMADDDVMDFYDDVDDNF
EQEVLGDDNEEEDPTVGGMAALAETYFQKLPTCVNRDFIDQASEEFLLKL
NTKGNRKKLVRNLFTVNRTRLDLLPFYSRLVATLTPCLPEIAPDLVYLLK
GSFLSHLRKKDQIHTEAKIKTVRFIGELTKFKVCPKAETLHCLKLLLDNF
THHNIDMACNLLETCGRFLYRSPESHPRMSALLEQMLRKKSAHAFDARHV
TMIENAFYYCNPPERQKIQRKIRPPMHEYIRKLLYKDLSKTTTEKVLRQM
RKLPWKEEKIKPYAVKCMINVWNIKFNNIRCLANMLAGISDYHDDVAISV
VDGVLENIRLGMETNVFRDNQRRLSSIKFLGEMYNYRLIDSQLIFSTLYL
MLTFGACVDMSLSELDPPEHLFRIRLICTLLDTCGQYFDRGSTKKKMDCF
LIFFQLYIRQKKESECWNENCPFPRDVDFMIADTIESMRPKLKLYSSVEE
AQEAANELTKEYEEKIKLISSAPDPNNISGSVDSTDDSNLSPSPFNSSPL
XEAWTPQMTATSHPVLSILHRSLSHPSVVPSLLKMTTRRLRWKITSWEMV
AKRGMGMSLMKTETKCL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032582XLOC_032582Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051419TCONS_00051419Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003890MIF4G-like_typ-3
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 941..968
NoneNo IPR availableCOILSCoilCoilcoord: 57..103
NoneNo IPR availableGENE3D1.25.40.180coord: 723..970
e-value: 6.7E-55
score: 185.3
NoneNo IPR availableGENE3D1.25.40.180coord: 523..711
e-value: 9.3E-42
score: 142.5
NoneNo IPR availableGENE3D1.25.40.180coord: 87..514
e-value: 1.1E-28
score: 99.6
IPR003890MIF4G-like, type 3SMARTSM00543if4_15coord: 524..713
e-value: 2.6E-38
score: 143.3
coord: 134..364
e-value: 6.2E-12
score: 55.6
coord: 728..941
e-value: 1.6E-36
score: 137.3
IPR003890MIF4G-like, type 3PFAMPF02854MIF4Gcoord: 731..940
e-value: 4.0E-34
score: 118.1
coord: 135..313
e-value: 1.5E-6
score: 27.9
coord: 528..712
e-value: 9.3E-23
score: 80.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 150..299
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 524..715
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 723..963

Blast
[Close]
BLAST of TCONS_00051419-protein vs. Swiss-Prot (Human)
Match: RENT2 (Regulator of nonsense transcripts 2 OS=Homo sapiens GN=UPF2 PE=1 SV=1)

HSP 1 Score: 963.755 bits (2490), Expect = 0.000e+0
Identity = 471/916 (51.42%), Postives = 652/916 (71.18%), Query Frame = 0 
Query:   71 KRQAEEEEKERERQKLEDEKKAATEAKSSAEERVKNRLKLRQENADIANNRPNEGFFKKLDSSMKKNTTFVKKLRTMTEQQRDSLINEFNGLNLSKFIQEAVTNLVDAKMKVSDVSAVAAMCSLFHQRYAEFTPLFKKNFSKNFDGIDCKDEDKSGNVSKLRTSLRLLGELVLDGVYGLDNGISLLKNFLQTIVSSDKTSFAYAAVILTIVRHCGEDIAGILPRKHRHWKEELRIELPLLNVINPDQQSIFLCLFKEYYEALSKHIVVSHKTLQNRERQNKQTIGLKGELPADRKEAFEKAQKTHEKLLTSLNSLSELLDEEMPDLPEDEQNESEDMGTVNVFTPLKGVEYDSETGLWEDEDTRTFYEKLEDLKEKVPQILFKESTTSTSSALQKKRSEKKKHVDRKLRHDINMADDDVMDFYDDV--DDNFEQEVLGDDNEE--------------EDPTVGGMAALAETYFQKLPTCVNRDFIDQASEEFLLKLNTKGNRKKLVRNLFTVNRTRLDLLPFYSRLVATLTPCLPEIAPDLVYLLKGSFLSHLRKKDQIHTEAKIKTVRFIGELTKFKVCPKAETLHCLKLLLDNFTHHNIDMACNLLETCGRFLYRSPESHPRMSALLEQMLRKKSAHAFDARHVTMIENAFYYCNPPERQKIQRKIRPPMHEYIRKLLYKDLSKTTTEKVLRQMRKLPWKEEKIKPYAVKCMINVWNIKFNNIRCLANMLAGISDYHDDVAISVVDGVLENIRLGMETNVFRDNQRRLSSIKFLGEMYNYRLIDSQLIFSTLYLMLTFGACVDMSLSELDPPEHLFRIRLICTLLDTCGQYFDRGSTKKKMDCFLIFFQLYIRQKKESECWNENCPFPRDVDFMIADTIESMRPKLKLYSSVEEAQEAANELTKEYEEKIKLIS 970
            KRQ EEE   + +     EK+ + +    A ER   R +LR +N +  ++RP E FF +LDSS+KKNT FVKKL+T+TEQQRDSL ++FNGLNLSK+I EAV ++V+AK+K+SDV+    +CSLFHQRYA+F P   + + K+F+    + E+K+ N++KLRT LR + EL + G++    G+SL+   L+ I+++D+ S  + +V+++  RHCG+DIAG++PRK +   E+  +  P   +I+P++Q  F  L KEY+ +L+KH+   H+ LQN ERQN++ +  KGEL  DR + +E+   +++KLL +  SL++LLDE MPDLP+D+    E    +++FTP K  EYD E G+WEDED R FYE L DLK  VP ILFK++  S  +  +  + + K+  + K   +++  DD  ++  +    DD  E E  GD+ E+              E  T   +  + + + Q+LP CVNRD ID+A+ +F + +NTK NRKKLVR LF V R RLDLLPFY+RLVATL PC+ ++A DL  +L+G F  H+RKKDQI+ E K KTVRFIGELTKFK+  K +TLHCLK+LL +F+HH+I+MAC LLETCGRFL+RSPESH R S LLEQM+RKK A   DAR+VTM+ENA+YYCNPP  +K  +K RPP+ EY+RKLLYKDLSK TTEKVLRQMRKLPW+++++K Y + CMIN+WN+K+N+I C+AN+LAG+  Y +DV I VVDGVLE+IRLGME N  + NQRR+SS KFLGE+YNYR+++S +IF TLY   +FG   D S S LDPPEHLFRIRL+CT+LDTCGQYFDRGS+K+K+DCFL++FQ Y+  KK  E W ++ PFP D+D+MI+DT+E +RPK+KL +S+EE+     +L +E+  K+ L++
Sbjct:  110 KRQQEEEAAAQMK-----EKEESIQLHQEAWERHHLRKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQVWKKHFEA---RKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNK-ESNKDDTKEAKESKENKEVSSPDDLELELENLEINDDTLELEG-GDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVN 1015
The following BLAST results are available for this feature:
BLAST of TCONS_00051419-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RENT20.000e+051.42Regulator of nonsense transcripts 2 OS=Homo sapien... [more]
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