|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00051485-protein ID=TCONS_00051485-protein|Name=TCONS_00051485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1114bp
MVPVYRLFLLVIVSQLALVVHSQVISASLREKIKKLKRTPQRSFLKWGYL
NTDSFSESMEIPAENIKDFQNYANLPETGILDDATVDQLSKPRCGLPENV
EQINARRGRRRNKGKKKNANETDDENDDDYNRSGRSRRYLQQGTSWLPLF
QKTGKNELKWTLENSGRTLDSSIIKINLRKAFDFWSQVTNLNFIEIPESQ
VGEPGFEKNDIEILVSFVTGQHNDPYWFDGPDGTLAHAFYPLTNVGLSGD
IHFDDDENYTIQSKDGYNFLWVAVHEIGHSIGLEHSDFDDAVMYPWFTAY
DPDLQLSLDDIFGIQSIYGAKDVPQTATTTTATTTTTTTPTPEPPLVITE
QDLIDTTDTFEVTKTPSTTRATTTATTTTTTTTPTTTTTTTIPTTTTTTP
TTTTTIPTTTTTTTIPTTTITTTPTTTTTIPTTTTTIPTTTTTTPTTTTT
IPTTTTTVPTTTITTTPTTTTTIPTTTTTIPTTTTTTPTTTTTIPTTTTT
VPTTTITTTPTTTTTIPTTTTTIPTTTTTTPTTTTTIPTTTTTVPTTTIT
TTPTTTTTIPTTTTTIPTTTTTTPTTTTTIPTTTTTVPTTTITTTPTTTT
TIPTTTTTIPTTTTTTPTTTTTIPTTTTTVPTTTITTIPTTTTTIPTTTT
TIPTTTTTTPTTTTTIPTTTTTVPTTTITTTPTTTTTIPTTTTTIPTTTT
TTPTTTTTIPTTTTTVPTTTITTIPTTTTTIPTTTTTIPTTTTTTPTTTT
TIPTTTTTTTITTTTITTTPTTTTTIPTTTTTIPTTTTTITTIPTTTTTV
PTTTITTTPTTTTTIPTTTTTIPTTTTTITTIPTTTTTVPTTTITTTPTT
TTTTPTMTITTPTTTITTTKSQSKSKSQSNRRCPTGITTAIFDAKRYGLK
IGFTNTNKMYFLGYRNSLPTFNRYSYFKRRHVPGNIDAVLANDFGKKKNL
IVFSGKRYVIYNNFDHISGPHSISEGTTDPLNFNFPRYVSKIDAALFWPR
NRRTYFFAGTQYWRYNNKKNDFDKGYPKDISRAWRGLPSSIDAAYSPPDK
SKTIFFARNRVYVFDTRKFRVQSDYGVERLLECDGAPKIPELGESEDELI
QSSNIKTLLRLSDP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0004222 | metalloendopeptidase activity |
| GO:0008237 | metallopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0031012 | extracellular matrix |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| cellular_component |
GO:0031012 |
extracellular matrix |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR021190 | Peptidase M10A | PRINTS | PR00138 | MATRIXIN | coord: 272..297
score: 55.02
coord: 89..102
score: 39.46
coord: 178..193
score: 48.7
coord: 306..319
score: 63.33
coord: 211..239
score: 49.62 |
| IPR018487 | Hemopexin-like repeats | SMART | SM00120 | HX_rpt_3 | coord: 992..1039
e-value: 1.2E-14
score: 64.7
coord: 1041..1083
e-value: 0.69
score: 16.7
coord: 936..980
e-value: 8.5
score: 8.5 |
| IPR018487 | Hemopexin-like repeats | PFAM | PF00045 | Hemopexin | coord: 992..1039
e-value: 1.8E-15
score: 56.5 |
| IPR018487 | Hemopexin-like repeats | PROSITE | PS51642 | HEMOPEXIN_2 | coord: 1038..1088
score: 8.395 |
| IPR018487 | Hemopexin-like repeats | PROSITE | PS51642 | HEMOPEXIN_2 | coord: 989..1037
score: 17.229 |
| IPR018487 | Hemopexin-like repeats | PROSITE | PS51642 | HEMOPEXIN_2 | coord: 933..980
score: 8.675 |
| IPR006026 | Peptidase, metallopeptidase | SMART | SM00235 | col_5 | coord: 146..320
e-value: 4.8E-34
score: 129.1 |
| IPR024079 | Metallopeptidase, catalytic domain | GENE3D | 3.40.390.10 | | coord: 25..327
e-value: 3.4E-59
score: 199.7 |
| IPR000585 | Hemopexin-like domain | GENE3D | 2.110.10.10 | | coord: 864..1086
e-value: 1.8E-34
score: 119.2 |
| IPR000585 | Hemopexin-like domain | CDD | cd00094 | HX | coord: 930..1075
e-value: 1.26227E-28
score: 113.946 |
| IPR000585 | Hemopexin-like domain | SUPERFAMILY | 50923 | Hemopexin-like domain | coord: 930..1083 |
| IPR001818 | Peptidase M10, metallopeptidase | PFAM | PF00413 | Peptidase_M10 | coord: 154..319
e-value: 2.4E-44
score: 150.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 104..134 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 326..346 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 839..882 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 364..749 |
| None | No IPR available | SUPERFAMILY | 55486 | Metalloproteases ("zincins"), catalytic domain | coord: 153..321 |
| IPR018486 | Hemopexin, conserved site | PROSITE | PS00024 | HEMOPEXIN | coord: 1030..1045 |
| IPR033739 | Peptidase M10A, catalytic domain | CDD | cd04278 | ZnMc_MMP | coord: 155..319
e-value: 8.34643E-57
score: 193.189 |
| IPR002477 | Peptidoglycan binding-like | SUPERFAMILY | 47090 | PGBD-like | coord: 39..98 |
Blast
BLAST of TCONS_00051485-protein vs. Swiss-Prot (Human)
Match: MMP28 (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 9.739e-36 Identity = 98/306 (32.03%), Postives = 142/306 (46.41%), Query Frame = 0
Query: 31 EKIKKLKRTPQRSFL-KWGYLNTD--------SFSESMEIPAENIKDFQNYANLPETGILDDATVDQLSKPRCGL------PENVEQINARRGRRRNKGKKKNANETDDENDDDYNRSGRSRRYLQQGTSWLPLFQKTGKNELKWTLENSGRTLDSSIIKINLRKAFDFWSQVTNLNFIEIPESQVGEPGFEKNDIEILVSFVTGQHNDPYW--FDGPDGTLAHAFYPLTNVGLSGDIHFDDDENYTIQSKDGYNFLWVAVHEIGHSIGLEHSDFDDAVMYPWFTAYDPDLQLSLDDIFGIQSIYG 319
E+ + R +FL K+GYLN FS++ I+ FQ + LP +G+LD AT+ Q+++PRCG+ E+I+ R R K ++K +R+ +QG W K L + L N L ++ +R AF WS V+ L F E P + +I ++F G HND FDGP G LAHAF P G+ HFD DE +++ + G N V HEIGH++GL HS A+M P++ D LS DD+ +QS+YG
Sbjct: 26 ERGGQELRKEAEAFLEKYGYLNEQVPKAPTSTRFSDA-------IRAFQWVSQLPVSGVLDRATLRQMTRPRCGVTDTNSYAAWAERISDLFARHRTKMRRK-------------------KRFAKQGNKWY-------KQHLSYRLVNWPEHLPEPAVRGAVRAAFQLWSNVSALEFWEAPAT---------GPADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPRR-----GEAHFDQDERWSLSRRRGRNLFVVLAHEIGHTLGLTHSPAPRALMAPYYKRLGRDALLSWDDVLAVQSLYG 284
The following BLAST results are available for this feature:
|
