TCONS_00051515-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051515-protein
Unique NameTCONS_00051515-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051515-protein ID=TCONS_00051515-protein|Name=TCONS_00051515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
MPRYDEGRSEGRSVLPTKSMMGGRLYVGKLPRDIRERDVEKEFRRYGRVK
DISMKGNYCFIQYESSRDASDAVHDLHGRMLWGERMSVEHARTPKEFGYR
RGSGGGGSRYHDRGYRRDSYRDSYHSRRRSPLRSDYRILVKNLSTRCDFH
DLKEVFGKAGSVLFADAHKKRVGEGLVEFDSRKDMERALKKLNGLEINGK
PIQLEIDEVKRRSRSRSRSRNRSRSRSRSRTRSRSRSRSRSRSRSRSRSR
SRGRSHSRSKSRSKSRSKSRSRSKSRSKSRSPRRSRSRSKSRSAERKSAG
GEEKKEVKKEQSDDEMFDEAERSVKRNKERRKEKGDASESEGEGGEKAKK
SEGGDDDEEIVEEIIEEEVEVEEEVEESEEEEQIVQEMSEIKVGEEQTKT
RKTGTEGNKKNTEDAKEENGQMEVDENGDERSQDDDAAASPDAEADGKRT
RGRKAAASSARSTRRSSRRASKPTEEEADE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032647XLOC_032647Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051515TCONS_00051515Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 361..388
NoneNo IPR availableGENE3D3.30.70.330coord: 106..223
e-value: 2.4E-17
score: 62.6
NoneNo IPR availableGENE3D3.30.70.330coord: 7..105
e-value: 1.9E-20
score: 72.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..480
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 137..205
e-value: 1.0E-14
score: 64.9
coord: 24..89
e-value: 4.1E-15
score: 66.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 25..84
e-value: 3.9E-12
score: 45.7
coord: 138..202
e-value: 4.1E-13
score: 48.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 136..209
score: 13.584
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 23..93
score: 15.136
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 24..103
coord: 133..206

Blast
[Close]
BLAST of TCONS_00051515-protein vs. Swiss-Prot (Human)
Match: SRSF4 (Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.298e-47
Identity = 89/182 (48.90%), Postives = 127/182 (69.78%), Query Frame = 0 
Query:   24 RLYVGKLPRDIRERDVEKEFRRYGRVKDISMKGNYCFIQYESSRDASDAVHDLHGRMLWGERMSVEHARTPKEFGYRRGSGGGG-SRYHDRGYRRDSYRDSYHSRRRSPLRSDYRILVKNLSTRCDFHDLKEVFGKAGSVLFADAHKKRVGEGLVEFDSRKDMERALKKLNGLEINGKPIQL 204
            R+Y+G+L    RERDVE+ F+ YG++ ++ +K  Y F++++  RDA DAV++L+G+ L GER+ VEHAR P+    R GS G G S Y   GYRR S RD Y      P R++YR++V+NLS+RC + DLK+   +AG V +ADAHK R  EG++EF S  DM+RAL+KL+G E+NG+ I+L
Sbjct:    3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPR----RDGSYGSGRSGY---GYRR-SGRDKYGP----PTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
The following BLAST results are available for this feature:
BLAST of TCONS_00051515-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF42.298e-4748.90Serine/arginine-rich splicing factor 4 OS=Homo sap... [more]
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