TCONS_00051827-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051827-protein
Unique NameTCONS_00051827-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051827-protein ID=TCONS_00051827-protein|Name=TCONS_00051827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp
MADEKSSSLLKRFHTKKTSSKPPKPNKNKPGNGPSPKPLPEAEGPENEAL
EAEIRGLSSLSPEDFSKKFEKMLDEMNLAEHLKKPIRQRDQQTKIGMLQQ
FMRREHSNKVASGPESPNDFLRKLGRNEFEPGELIQILQALRVNLTGKPL
SWIKDFGSEGLESILNHLRFFICSSSHHDQRVHHECVKCLKAFMNNKFGL
SLMLKNIQGLTLLAQSIRADNPGMMQDVVKIMAAVSLVSHEKALEAMTMK
GEAENKARFSAVITALKGDNYPATLKVACLQMINALVATPDDLDFRLHLR
NEIIREGFSDALPGLREMDQDDLNVQLDIFDEHKDDDAVEFQHRYNDIQL
HMDDMQELFSVLNTVVEDTPSHGYFLSILQHLLLIRDDVFARPQYFRLIE
ECVSQIVLQKQGVDPDFAAQKLSIDVDTLVEGQIDNAKVEEFEKKVKILE
EKLKEETTKRSEIETKLSMAEANHAKEIKDIEERLSKAGPPVGSAPPPPP
PPPLPGGGPPPPPPPPGPGGGPX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032807XLOC_032807Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051827TCONS_00051827Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010472FH3_dom
IPR010473GTPase-bd
IPR011989ARM-like
IPR014768GBD/FH3_dom
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO:0017048Rho GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0030036actin cytoskeleton organization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030036 actin cytoskeleton organization
biological_process GO:0016043 cellular component organization
molecular_function GO:0003779 actin binding
molecular_function GO:0005488 binding
molecular_function GO:0017048 Rho GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 439..473
IPR010472Formin, FH3 domainSMARTSM01139Drf_FH3_2coord: 238..425
e-value: 1.4E-61
score: 220.5
IPR010472Formin, FH3 domainPFAMPF06367Drf_FH3coord: 240..428
e-value: 7.3E-51
score: 172.5
IPR010473Formin, GTPase-binding domainSMARTSM01140Drf_GBD_2coord: 57..237
e-value: 5.9E-49
score: 178.6
IPR010473Formin, GTPase-binding domainPFAMPF06371Drf_GBDcoord: 61..235
e-value: 7.3E-33
score: 113.6
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 116..341
e-value: 8.9E-52
score: 175.0
IPR014768Rho GTPase-binding/formin homology 3 (GBD/FH3) domainPROSITEPS51232GBD_FH3coord: 57..414
score: 22.704
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 67..417

Blast
[Close]
BLAST of TCONS_00051827-protein vs. Swiss-Prot (Human)
Match: DIAP3 (Protein diaphanous homolog 3 OS=Homo sapiens GN=DIAPH3 PE=1 SV=4)

HSP 1 Score: 333.183 bits (853), Expect = 1.875e-102
Identity = 183/462 (39.61%), Postives = 285/462 (61.69%), Query Frame = 0 
Query:   60 LSPEDFSKKFEKMLDEMNLAEHLKKPIRQRDQQTKIGMLQQFMRREHSNKVASGPES----PNDFLRKLGRNEFEPGELIQILQALRVNLTGKPLSWIKDFGSEGLESILNHLRFFICSSSHHD--QRVHHECVKCLKAFMNNKFGLSLMLKNIQGLTLLAQSIRADNPGMMQDVVKIMAAVSLVSHE----KALEAMTMKGEAENKARFSAVITALKGDNYPATLKVACLQMINALVATPDDLDFRLHLRNEIIREGFSDALPGLREMDQDDLNVQLDIFDEHKDDDAVEFQHRYNDIQLHMDDMQELFSVLNTVVEDTPSHGYFLSILQHLLLIRDDVFARPQYFRLIEECVSQIVLQKQGVDPDFAAQK-LSIDVDTLVEGQIDNAKVEEFEKKVKILEEKLKEETTKRSEIETKLSMAEANHAKEIKDIEERLSKAGPPVGSAPPP---PPPPPLPGG 507
            LS  +  + FEKM+++MNL E  K P+R++D   K  M+ Q++    ++K  S   S    P +F+ +L     +   L+  L++LRV+LT  P+SW++ FG EGL  +L+ L   I         ++  H+ ++CLKA MN ++GL  ++   + L+LLA+++   +P MM DVVK+++AV +V  E    + LEA+T  GE +   RF  ++  L+ ++    L+VAC+Q+INALV +PDDLDFRLH+RNE +R G  + LP L+ +  D L++QL +FDEHK++D  E  HR  DI+  +D+  ++++++ + V++T + GYF+SILQHLLLIR+D F R QYF+LI+ECVSQIVL + G+DPDF  +K L +D+   V+  ID AK+EEFE+K   L +K ++E T   E + +L   EA    +I +++  L       G+ P     P PP   GG
Sbjct:  117 LSENELLELFEKMMEDMNLNEDKKAPLREKDFSIKKEMVMQYINT--ASKTGSLKRSRQISPQEFIHELKMGSADE-RLVTCLESLRVSLTSNPVSWVESFGHEGLGLLLDILEKLISGKIQEKVVKKNQHKVIQCLKALMNTQYGLERIMSEERSLSLLAKAVDPRHPNMMTDVVKLLSAVCIVGEESILEEVLEALTSAGEEKKIDRFFCIVEGLRHNS--VQLQVACMQLINALVTSPDDLDFRLHIRNEFMRCGLKEILPNLKCIKNDGLDIQLKVFDEHKEEDLFELSHRLEDIRAELDEAYDVYNMVWSTVKETRAEGYFISILQHLLLIRNDYFIRQQYFKLIDECVSQIVLHRDGMDPDFTYRKRLDLDLTQFVDICIDQAKLEEFEEKASELYKKFEKEFTDHQETQAELQKKEA----KINELQAELQAFKSQFGALPADCNIPLPPSKEGG 569
The following BLAST results are available for this feature:
BLAST of TCONS_00051827-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIAP31.875e-10239.61Protein diaphanous homolog 3 OS=Homo sapiens GN=DI... [more]
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