TCONS_00051861-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051861-protein
Unique NameTCONS_00051861-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051861-protein ID=TCONS_00051861-protein|Name=TCONS_00051861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=589bp
XPYACGSGIPEIKTILGGFIIKGYLGYWTLVVKSFTLITAVSSGLSLGKE
GPLVHVAACIGNVFVRLFPKYHGNEAKRREVLSAAAAAGVSVAFGAPIGG
VLFSLEEVSYYFPMKTLWRTFFCALMAALTLGYMNPYGNGRLVMFAVDYN
LPWQLFELIPFIILGVFGGVFGSLFIKANLFWCKLRKSSILGKKPIVEVF
TVAIITAIVAYPNEYTRQPASRLISDLFQNCGPEDGSPLCDYNYHSNVTH
NINSNTYPHRSIGPGVYNALWKLTLAMLFKGLITIFTFGIKVPAGLFIPS
LAVGACAGRIVGIFMENLVDSNKDFFLWKSVCQNAQGHCILPGLYAMIGA
ASTLGGVTRMTVSLVVIMFELTGGLTYIVPLMVAVMTSKWVGDALGKEGI
YDEHIHLNGYPFLDSKEEFTHTTLAADVMKPRRNASPLICIPKTGSTVGE
LEHLMEEYRFNGFPVIVDHESQMLSGFVTRRDLKVAIHHGRLRNDQIVTP
SKVYFSKKEPTPGAGGIPALCLRHILDVSPFTVSDATPMESVIDMFRKLG
LRQILITHNGKLLGIITKKDVLRHIFQMKNQDPDSILFH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032821XLOC_032821Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051861TCONS_00051861Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001807Cl-channel_volt-gated
IPR000644CBS_dom
IPR014743Cl-channel_core
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006821chloride transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005247voltage-gated chloride channel activity
GO:0005216ion channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006821 chloride transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005247 voltage-gated chloride channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001807Chloride channel, voltage gatedPRINTSPR00762CLCHANNELcoord: 343..359
score: 63.18
coord: 87..106
score: 77.2
coord: 292..312
score: 58.76
coord: 33..52
score: 57.5
coord: 361..380
score: 61.6
coord: 2..19
score: 72.56
coord: 400..414
score: 50.8
IPR001807Chloride channel, voltage gatedPFAMPF00654Voltage_CLCcoord: 2..393
e-value: 6.0E-101
score: 338.1
IPR000644CBS domainSMARTSM00116cbs_1coord: 437..488
e-value: 8.4E-5
score: 31.9
coord: 529..576
e-value: 2.8E-8
score: 43.5
IPR000644CBS domainPFAMPF00571CBScoord: 529..575
e-value: 1.7E-7
score: 31.5
coord: 427..488
e-value: 1.6E-6
score: 28.4
IPR000644CBS domainPROSITEPS51371CBScoord: 526..585
score: 10.866
IPR000644CBS domainPROSITEPS51371CBScoord: 429..496
score: 10.241
IPR014743Chloride channel, coreGENE3D1.10.3080.10coord: 1..416
e-value: 2.1E-148
score: 494.4
IPR014743Chloride channel, coreSUPERFAMILY81340Clc chloride channelcoord: 270..416
coord: 2..233
NoneNo IPR availableGENE3D3.10.580.10coord: 419..586
e-value: 1.5E-24
score: 85.8
NoneNo IPR availableCDDcd04591CBS_pair_EriC_assoc_euk_baccoord: 436..574
e-value: 8.38885E-31
score: 115.042
NoneNo IPR availableCDDcd03684ClC_3_likecoord: 2..413
e-value: 0.0
score: 609.608
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 414..576

Blast
[Close]
BLAST of TCONS_00051861-protein vs. Swiss-Prot (Human)
Match: CLCN3 (H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens GN=CLCN3 PE=1 SV=2)

HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0
Identity = 379/588 (64.46%), Postives = 465/588 (79.08%), Query Frame = 0 
Query:    2 PYACGSGIPEIKTILGGFIIKGYLGYWTLVVKSFTLITAVSSGLSLGKEGPLVHVAACIGNVFVRLFPKYHGNEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPMKTLWRTFFCALMAALTLGYMNPYGNGRLVMFAVDYNLPWQLFELIPFIILGVFGGVFGSLFIKANLFWCKLRKSSILGKKPIVEVFTVAIITAIVAYPNEYTRQPASRLISDLFQNCGPEDGSPLCDYNYHSNVTHNINSNTYPHRSIGPGVYNALWKLTLAMLFKGLITIFTFGIKVPAGLFIPSLAVGACAGRIVGIFMENLVDSNKDFFLWKSVCQNAQGHCILPGLYAMIGAASTLGGVTRMTVSLVVIMFELTGGLTYIVPLMVAVMTSKWVGDALGKEGIYDEHIHLNGYPFLDSKEEFTHTTLAADVMKPRRNASPLICIPKTGSTVGELEHLMEEYRFNGFPVIVDHESQMLSGFVTRRDLKVAIHHGRLRNDQIVTPSKVYFSKKEPTPGAGGIPALCLRHILDVSPFTVSDATPMESVIDMFRKLGLRQILITHNGKLLGIITKKDVLRHIFQMKNQDPDSILFH 589
            PYACGSGIPEIKTIL GFII+GYLG WTL++K+ TL+ AV+SGLSLGKEGPLVHVA C GN+F  LFPKY  NEAK+REVLSAA+AAGVSVAFGAPIGGVLFSLEEVSYYFP+KTLWR+FF AL+AA  L  +NP+GN RLV+F V+Y+ PW LFEL PFI+LGVFGG++G+ FI+AN+ WC+ RKS+  GK P++EV  VA ITA++A+PN YTR   S LI +LF +CGP + S LCDY    N +  ++    P R  G GVY+A+W+L LA++FK ++T+FTFGIKVP+GLFIPS+A+GA AGRIVGI +E L   + D+F++K  C+     CI PGLYAM+GAA+ LGGVTRMTVSLVVI+FELTGGL YIVPLM AVMTSKWVGDA G+EGIY+ HI LNGYPFLD+KEEFTHTTLAADVM+PRRN  PL  + +   TV ++E+++ E  +NGFPVI+  ESQ L GF  RRDL +AI   R + + IV  S+V F++  P+  A     L LR ILD+SPFTV+D TPME V+D+FRKLGLRQ L+THNG+LLGIITKKD+LRH+ Q  NQDP SI+F+
Sbjct:  234 PYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTKFGKYPVLEVIIVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDD--IPDRPAGIGVYSAIWQLCLALIFKIIMTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQLAYYHHDWFIFKEWCE-VGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRNDPPLAVLTQDNMTVDDIENMINETSYNGFPVIMSKESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDILRHMAQTANQDPASIMFN 818
The following BLAST results are available for this feature:
BLAST of TCONS_00051861-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLCN30.000e+064.46H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens ... [more]
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